org.gcube.application.aquamaps.aquamapsservice.impl.db.managers
Class SpeciesManager

java.lang.Object
  org.gcube.application.aquamaps.aquamapsservice.impl.db.managers.SpeciesManager

public class SpeciesManager
extends Object

Field Summary

static String	CATALOG_OF_LIFE
static String	FISHBASE
static String	IRMNG
static String	ITIS
static String	OBIS
static String	speciesOccurSum
static String	THREE_A_CODE
static String	WORMS

Constructor Summary

SpeciesManager()

Method Summary

static String	getCommonTaxonomy(Set<org.gcube.application.aquamaps.aquamapsservice.stubs.datamodel.enhanced.Species> species)
static String	getCompleteName(String hspenName, String fieldName)
static File	getCSVList(List<org.gcube.application.aquamaps.aquamapsservice.stubs.datamodel.enhanced.Filter> genericSearch, List<org.gcube.application.aquamaps.aquamapsservice.stubs.datamodel.enhanced.Filter> specificSearch, int HSPENId)
static String	getFilteredHSPEN(String sourceHSPEN, Set<org.gcube.application.aquamaps.aquamapsservice.stubs.datamodel.enhanced.Species> toInsert)
static String	getJSONList(org.gcube_system.namespaces.application.aquamaps.types.PagedRequestSettings settings, List<org.gcube.application.aquamaps.aquamapsservice.stubs.datamodel.enhanced.Filter> genericSearch, List<org.gcube.application.aquamaps.aquamapsservice.stubs.datamodel.enhanced.Filter> specificSearch, int HSPENId)
static String	getJSONTaxonomy(org.gcube.application.aquamaps.aquamapsservice.stubs.datamodel.enhanced.Field toSelect, List<org.gcube.application.aquamaps.aquamapsservice.stubs.datamodel.enhanced.Field> filters, org.gcube_system.namespaces.application.aquamaps.types.PagedRequestSettings settings)
static Set<org.gcube.application.aquamaps.aquamapsservice.stubs.datamodel.enhanced.Species>	getList(List<org.gcube.application.aquamaps.aquamapsservice.stubs.datamodel.enhanced.Field> filters)
static Set<org.gcube.application.aquamaps.aquamapsservice.stubs.datamodel.enhanced.Species>	getList(List<org.gcube.application.aquamaps.aquamapsservice.stubs.datamodel.enhanced.Field> filters, org.gcube.application.aquamaps.aquamapsservice.stubs.datamodel.enhanced.Resource hspen)
static org.gcube.application.aquamaps.aquamapsservice.stubs.datamodel.enhanced.Species	getSpeciesById(boolean fetchStatic, boolean fetchEnvelope, String id, int hspenId)
static Map<String,String>	getSpeciesNamesById(String speciesId)
static String	perturbationUpdate(String hspenTable, Map<String,org.gcube.application.aquamaps.aquamapsservice.stubs.datamodel.enhanced.Perturbation> toSetPerturbations, String speciesId)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

speciesOccurSum

public static final String speciesOccurSum

See Also:

Constant Field Values

CATALOG_OF_LIFE

public static final String CATALOG_OF_LIFE

See Also:

Constant Field Values

FISHBASE

public static final String FISHBASE

See Also:

Constant Field Values

IRMNG

public static final String IRMNG

See Also:

Constant Field Values

ITIS

public static final String ITIS

See Also:

Constant Field Values

THREE_A_CODE

public static final String THREE_A_CODE

See Also:

Constant Field Values

WORMS

public static final String WORMS

See Also:

Constant Field Values

OBIS

public static final String OBIS

See Also:

Constant Field Values

Constructor Detail

SpeciesManager

public SpeciesManager()

Method Detail

getSpeciesNamesById

public static Map<String,String> getSpeciesNamesById(String speciesId)
                                              throws SQLException,
                                                     Exception

Throws:

SQLException

Exception

getSpeciesById

public static org.gcube.application.aquamaps.aquamapsservice.stubs.datamodel.enhanced.Species getSpeciesById(boolean fetchStatic,
                                                                                                             boolean fetchEnvelope,
                                                                                                             String id,
                                                                                                             int hspenId)
                                                                                                      throws Exception

Throws:

Exception

getList

public static Set<org.gcube.application.aquamaps.aquamapsservice.stubs.datamodel.enhanced.Species> getList(List<org.gcube.application.aquamaps.aquamapsservice.stubs.datamodel.enhanced.Field> filters)
                                                                                                    throws Exception

Throws:

Exception

getList

public static Set<org.gcube.application.aquamaps.aquamapsservice.stubs.datamodel.enhanced.Species> getList(List<org.gcube.application.aquamaps.aquamapsservice.stubs.datamodel.enhanced.Field> filters,
                                                                                                           org.gcube.application.aquamaps.aquamapsservice.stubs.datamodel.enhanced.Resource hspen)
                                                                                                    throws Exception

Throws:

Exception

getFilteredHSPEN

public static String getFilteredHSPEN(String sourceHSPEN,
                                      Set<org.gcube.application.aquamaps.aquamapsservice.stubs.datamodel.enhanced.Species> toInsert)
                               throws Exception

Throws:

Exception

getJSONList

public static String getJSONList(org.gcube_system.namespaces.application.aquamaps.types.PagedRequestSettings settings,
                                 List<org.gcube.application.aquamaps.aquamapsservice.stubs.datamodel.enhanced.Filter> genericSearch,
                                 List<org.gcube.application.aquamaps.aquamapsservice.stubs.datamodel.enhanced.Filter> specificSearch,
                                 int HSPENId)
                          throws Exception

Throws:

Exception

getCSVList

public static File getCSVList(List<org.gcube.application.aquamaps.aquamapsservice.stubs.datamodel.enhanced.Filter> genericSearch,
                              List<org.gcube.application.aquamaps.aquamapsservice.stubs.datamodel.enhanced.Filter> specificSearch,
                              int HSPENId)
                       throws Exception

Throws:

Exception

getCompleteName

public static String getCompleteName(String hspenName,
                                     String fieldName)
                              throws Exception

Throws:

Exception

perturbationUpdate

public static String perturbationUpdate(String hspenTable,
                                        Map<String,org.gcube.application.aquamaps.aquamapsservice.stubs.datamodel.enhanced.Perturbation> toSetPerturbations,
                                        String speciesId)
                                 throws Exception

Throws:

Exception

getJSONTaxonomy

public static String getJSONTaxonomy(org.gcube.application.aquamaps.aquamapsservice.stubs.datamodel.enhanced.Field toSelect,
                                     List<org.gcube.application.aquamaps.aquamapsservice.stubs.datamodel.enhanced.Field> filters,
                                     org.gcube_system.namespaces.application.aquamaps.types.PagedRequestSettings settings)
                              throws Exception

Throws:

Exception

getCommonTaxonomy

public static String getCommonTaxonomy(Set<org.gcube.application.aquamaps.aquamapsservice.stubs.datamodel.enhanced.Species> species)
                                throws Exception

Throws:

Exception