org.gcube.application.enm.service.plugins.comps
Class COMPSsClient

java.lang.Object
  org.gcube.application.enm.service.plugins.comps.COMPSsClient

public class COMPSsClient
extends Object

COMPSs client for the execution of openModeller experiments.

Author:

Roger Rafanell

Constructor Summary

COMPSsClient(String endpoint)
Instantiates a new OModeller client.

Method Summary

int	getCompletness(BESCredential besCred, String[] jobIds)
List<JobProgress>	getJobsProgress(BESCredential besCred, String[] jobIds) Retrieves the progress of concrete jobs.
List<JobStatus>	OModellerStatus(BESCredential besCred, String[] jobIds) Retrieves the status of a list of submitted jobs.
String	submitModel(BESCredential besCred, StorageCredential cred, Integer wallClockTime, String VMImage, Double diskSize, Integer cores, Double memory, Integer minOfVMs, Integer maxOfVMs, String jobName, String appLocation, String logsDir, String requests, String testPoints, String outputs) Submit a OModeller Job to the COMPSs enactment service.
List<String>	terminateOModeller(BESCredential besCred, String[] jobIds) Terminate a list of submitted jobs.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

COMPSsClient

public COMPSsClient(String endpoint)

Instantiates a new OModeller client.

Parameters:

endpoint - The endpoint of the COMPSs enactment service.

tempDir - the temp dir

Method Detail

submitModel

public String submitModel(BESCredential besCred,
                          StorageCredential cred,
                          Integer wallClockTime,
                          String VMImage,
                          Double diskSize,
                          Integer cores,
                          Double memory,
                          Integer minOfVMs,
                          Integer maxOfVMs,
                          String jobName,
                          String appLocation,
                          String logsDir,
                          String requests,
                          String testPoints,
                          String outputs)

Submit a OModeller Job to the COMPSs enactment service.

Parameters:

besCred - the BES credential.

cred - the FTP Storage credential.

appLocation - the CDMI URI of the application.

diskSize - Set the size of the needed disk size in GB.

minOfVMs - the minimum number of VMs allowed in the execution.

maxOfVMs - the maximum number of VMs allowed in the execution.

inputSequence - Path of the sequence file in the storage (relative to the user home).

dataBase - Path of the database file in the storage (relative to the user home).

numFragments - Number of sequence fragments.

outputFile - Path of the OModeller output in the storage (relative to the user home).

commandArgs - Command line arguments for blastall binary.

Returns:

A string containing the JobID of the execution.

OModellerStatus

public List<JobStatus> OModellerStatus(BESCredential besCred,
                                       String[] jobIds)

Retrieves the status of a list of submitted jobs.

Parameters:

besCred - the BES credential.

jobIds - Array of job IDs. One job is supported in this version.

Returns:

Array of ActivityStatus containing the status of the job.

getJobsProgress

public List<JobProgress> getJobsProgress(BESCredential besCred,
                                         String[] jobIds)

Retrieves the progress of concrete jobs.

Parameters:

besCred - the BES credential.

jobIds - The IDs of the retrieved jobs.

Returns:

List of JobProgress objects of each job.

terminateOModeller

public List<String> terminateOModeller(BESCredential besCred,
                                       String[] jobIds)

Terminate a list of submitted jobs.

Parameters:

besCred - the BES credential.

jobIds - Array of job IDs

getCompletness

public int getCompletness(BESCredential besCred,
                          String[] jobIds)