A B C D E F G H I J L M N O P Q R S T U W Y

A

abort - Variable in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

abort() - Method in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

activeNodes - Variable in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

activeNodes - Variable in class org.gcube.dataanalysis.executor.job.management.RemoteJobManager

actualNumberOfNodes - Variable in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

allSpeciesObservations - Variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableFunctions

AquamapsSuitableFunctions - Class in org.gcube.dataanalysis.executor.nodes.algorithms

AquamapsSuitableFunctions(AquamapsAlgorithmCore, String, AlgorithmConfiguration) - Constructor for class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableFunctions

AquamapsSuitableNode - Class in org.gcube.dataanalysis.executor.nodes.algorithms

AquamapsSuitableNode() - Constructor for class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode

AquamapsSuitableNode1v - Class in org.gcube.dataanalysis.executor.nodes.algorithms

AquamapsSuitableNode1v() - Constructor for class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode1v

B

broadcastTimePeriod - Static variable in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

buildScriptFile(String, String, String, String) - Method in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceGenerator

buildScriptFile(String, String, String, String) - Method in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceQueueGenerator

buildScriptFile(String, String, String, String) - Method in class org.gcube.dataanalysis.executor.job.management.DistributedProcessingAgent

C

calcProb(Object, Object) - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableFunctions

calculateBoundingBox(Object[]) - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableFunctions

completeDistribution - Variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableFunctions

computationWatcherTimerPeriod - Static variable in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

compute() - Method in class org.gcube.dataanalysis.executor.generators.D4ScienceDistributedProcessing

compute() - Method in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceGenerator

compute() - Method in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceQueueGenerator

compute() - Method in class org.gcube.dataanalysis.executor.job.management.DistributedProcessingAgent

computingNodes - Variable in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

config - Variable in class org.gcube.dataanalysis.executor.generators.D4ScienceDistributedProcessing

config - Variable in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceGenerator

config - Variable in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceQueueGenerator

configurationFile - Variable in class org.gcube.dataanalysis.executor.job.management.DistributedProcessingAgent

consumer - Variable in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

containerFolder - Variable in class org.gcube.dataanalysis.executor.job.management.DistributedProcessingAgent

core - Variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableFunctions

core - Variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode

core - Variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode1v

countAll - Static variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableFunctions

countAllSpeciesQuery - Static variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableFunctions

countCellsQuery - Variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode

countCellsQuery - Variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode1v

countCsquareCodeQuery - Static variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableFunctions

countSpeciesQuery - Variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode

countSpeciesQuery - Variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode1v

createTableStatement - Static variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableFunctions

createTableStatement - Variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode

createTableStatement - Variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode1v

csquareCodeQuery - Static variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableFunctions

currentconfig - Variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableFunctions

currentconfig - Variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode

currentconfig - Variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode1v

currentconfig - Variable in class org.gcube.dataanalysis.executor.nodes.transducers.OccurrenceMergingNode

currentFAOAreas - Variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableFunctions

currentNumberOfStages - Variable in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

currentSpeciesBoundingBoxInfo - Variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableFunctions

D

D4ScienceDistributedProcessing - Class in org.gcube.dataanalysis.executor.generators

D4ScienceDistributedProcessing() - Constructor for class org.gcube.dataanalysis.executor.generators.D4ScienceDistributedProcessing

D4ScienceDistributedProcessing(AlgorithmConfiguration) - Constructor for class org.gcube.dataanalysis.executor.generators.D4ScienceDistributedProcessing

D4ScienceGenerator - Class in org.gcube.dataanalysis.executor.generators.v1

D4ScienceGenerator() - Constructor for class org.gcube.dataanalysis.executor.generators.v1.D4ScienceGenerator

D4ScienceGenerator(AlgorithmConfiguration) - Constructor for class org.gcube.dataanalysis.executor.generators.v1.D4ScienceGenerator

D4ScienceQueueGenerator - Class in org.gcube.dataanalysis.executor.generators.v1

D4ScienceQueueGenerator() - Constructor for class org.gcube.dataanalysis.executor.generators.v1.D4ScienceQueueGenerator

D4ScienceQueueGenerator(AlgorithmConfiguration) - Constructor for class org.gcube.dataanalysis.executor.generators.v1.D4ScienceQueueGenerator

dbHibConnection - Variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode

dbHibConnection - Variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode1v

dbHibConnection - Variable in class org.gcube.dataanalysis.executor.nodes.transducers.OccurrenceMergingNode

defaultContainerFolder - Static variable in class org.gcube.dataanalysis.executor.generators.D4ScienceDistributedProcessing

defaultJobOutput - Static variable in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceGenerator

defaultJobOutput - Static variable in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceQueueGenerator

defaultJobOutput - Static variable in class org.gcube.dataanalysis.executor.job.management.DistributedProcessingAgent

defaultScriptFile - Static variable in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceGenerator

defaultScriptFile - Static variable in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceQueueGenerator

defaultScriptFile - Static variable in class org.gcube.dataanalysis.executor.job.management.DistributedProcessingAgent

deleteDuplicates - Static variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableFunctions

deletefiles - Static variable in class org.gcube.dataanalysis.executor.generators.D4ScienceDistributedProcessing

deletefiles - Static variable in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceQueueGenerator

deletefiles - Variable in class org.gcube.dataanalysis.executor.job.management.DistributedProcessingAgent

deleteRemoteFolder() - Method in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

destinationTable - Variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode

destinationTable - Variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode1v

destinationTableLabel - Variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode

destinationTableLabel - Variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode1v

destroy() - Method in class org.gcube.dataanalysis.executor.job.management.QueueWorkerWatcher

destroyAllWatchers() - Method in class org.gcube.dataanalysis.executor.job.management.QueueJobManager.StatusListener

distributedModel - Variable in class org.gcube.dataanalysis.executor.generators.D4ScienceDistributedProcessing

DistributedProcessingAgent - Class in org.gcube.dataanalysis.executor.job.management

DistributedProcessingAgent(Serializable, String, String, String, String, String, String, int, boolean, int, int) - Constructor for class org.gcube.dataanalysis.executor.job.management.DistributedProcessingAgent

A distributed processing agent.

distributionModel - Variable in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceGenerator

distributionModel - Variable in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceQueueGenerator

DummyExecutorScriptPlugin - Class in org.gcube.dataanalysis.executor.plugin.dummy

DummyExecutorScriptPlugin() - Constructor for class org.gcube.dataanalysis.executor.plugin.dummy.DummyExecutorScriptPlugin

DummyScriptPluginContext - Class in org.gcube.dataanalysis.executor.plugin.dummy

DummyScriptPluginContext() - Constructor for class org.gcube.dataanalysis.executor.plugin.dummy.DummyScriptPluginContext

dumpAll(String) - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableFunctions

E

endpoints - Variable in class org.gcube.dataanalysis.executor.job.management.DistributedProcessingAgent

environmentVectors - Variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableFunctions

eprs - Variable in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

ExecuteGetLine(String, GCUBELog) - Static method in class org.gcube.dataanalysis.executor.scripts.OSCommand

executeNode(int, int, int, int, boolean, String, String, String) - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode

executeNode(int, int, int, int, boolean, String, String, String) - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode1v

executeNode(int, int, int, int, boolean, String, String, String) - Method in class org.gcube.dataanalysis.executor.nodes.transducers.OccurrenceMergingNode

executeScript(List<String>, List<String>, String, String, String, String, String, String, String, String, String, String, boolean) - Method in class org.gcube.dataanalysis.executor.scripts.GetExecuteScript

ExecutorScriptPlugin - Class in org.gcube.dataanalysis.executor.plugin

ExecutorScriptPlugin() - Constructor for class org.gcube.dataanalysis.executor.plugin.ExecutorScriptPlugin

F

FileCopy(String, String) - Static method in class org.gcube.dataanalysis.executor.scripts.OSCommand

filenames - Variable in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

fileurls - Variable in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

filterProbabilitySet(Queue<String>) - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode

filterProbabilitySet(Queue<String>) - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode1v

forceUpload - Static variable in class org.gcube.dataanalysis.executor.generators.D4ScienceDistributedProcessing

forceUpload - Static variable in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceQueueGenerator

forceUpload - Variable in class org.gcube.dataanalysis.executor.job.management.DistributedProcessingAgent

G

generate(AlgorithmConfiguration) - Static method in class org.gcube.dataanalysis.executor.tests.TestD4ScienceMaps

generate(AlgorithmConfiguration) - Static method in class org.gcube.dataanalysis.executor.tests.TestD4ScienceQueueMaps

generate(AlgorithmConfiguration) - Static method in class org.gcube.dataanalysis.executor.tests.TestD4ScienceQueueMaps2

generate(AlgorithmConfiguration) - Static method in class org.gcube.dataanalysis.executor.tests.TestD4ScienceQueueMaps2_1

generate(AlgorithmConfiguration) - Static method in class org.gcube.dataanalysis.executor.tests.TestD4ScienceQueueMaps2_2

generate(AlgorithmConfiguration) - Static method in class org.gcube.dataanalysis.executor.tests.TestD4ScienceQueueMaps3

generate(AlgorithmConfiguration) - Static method in class org.gcube.dataanalysis.executor.tests.TestD4ScienceQueueMultipleMaps

generate(AlgorithmConfiguration) - Static method in class org.gcube.dataanalysis.executor.tests.TestGenerator

getActiveNodes() - Method in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

getActiveNodes() - Method in class org.gcube.dataanalysis.executor.job.management.RemoteJobManager

getAdditionalInformation(Object, Object) - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableFunctions

getAlgorithm() - Method in class org.gcube.dataanalysis.executor.generators.D4ScienceDistributedProcessing

getAlgorithm() - Method in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceGenerator

getAlgorithm() - Method in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceQueueGenerator

getBoundingBoxInformation(Object[], Object[]) - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableFunctions

getDescription() - Method in class org.gcube.dataanalysis.executor.generators.D4ScienceDistributedProcessing

getDescription() - Method in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceGenerator

getDescription() - Method in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceQueueGenerator

getDescription() - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode

getDescription() - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode1v

getDescription() - Method in class org.gcube.dataanalysis.executor.nodes.transducers.OccurrenceMergingNode

GetExecuteScript - Class in org.gcube.dataanalysis.executor.scripts

GetExecuteScript() - Constructor for class org.gcube.dataanalysis.executor.scripts.GetExecuteScript

GetExecuteScript(GCUBELog) - Constructor for class org.gcube.dataanalysis.executor.scripts.GetExecuteScript

getGenerationConfig(int, String, String, String, String, String, String, String, String) - Static method in class org.gcube.dataanalysis.executor.tests.TestGenerator

getGeographicalID(Object) - Static method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableFunctions

getInfrastructure() - Method in class org.gcube.dataanalysis.executor.generators.D4ScienceDistributedProcessing

getInfrastructure() - Method in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceGenerator

getInfrastructure() - Method in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceQueueGenerator

getInfrastructure() - Method in class org.gcube.dataanalysis.executor.job.management.DistributedProcessingAgent

getInputParameters() - Method in class org.gcube.dataanalysis.executor.generators.D4ScienceDistributedProcessing

getInputParameters() - Method in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceGenerator

getInputParameters() - Method in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceQueueGenerator

getInputParameters() - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode

getInputParameters() - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode1v

getInputParameters() - Method in class org.gcube.dataanalysis.executor.nodes.transducers.OccurrenceMergingNode

getInternalStatus() - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode

getInternalStatus() - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode1v

getInternalStatus() - Method in class org.gcube.dataanalysis.executor.nodes.transducers.OccurrenceMergingNode

getLoad() - Method in class org.gcube.dataanalysis.executor.generators.D4ScienceDistributedProcessing

getLoad() - Method in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceGenerator

getLoad() - Method in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceQueueGenerator

getLoad() - Method in class org.gcube.dataanalysis.executor.job.management.DistributedProcessingAgent

getMainInfoID(Object) - Static method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableFunctions

getName() - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode

getName() - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode1v

getName() - Method in class org.gcube.dataanalysis.executor.nodes.transducers.OccurrenceMergingNode

getNumberOfGeoInfo() - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode1v

getNumberOfLeftElements() - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode

getNumberOfLeftElements() - Method in class org.gcube.dataanalysis.executor.nodes.transducers.OccurrenceMergingNode

getNumberOfNodes() - Method in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

getNumberOfNodes() - Method in class org.gcube.dataanalysis.executor.job.management.RemoteJobManager

getNumberOfProcessedSpecies() - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode1v

getNumberOfRightElements() - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode

getNumberOfRightElements() - Method in class org.gcube.dataanalysis.executor.nodes.transducers.OccurrenceMergingNode

getNumberOfSpecies() - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode1v

getOutput() - Method in class org.gcube.dataanalysis.executor.generators.D4ScienceDistributedProcessing

getOutput() - Method in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceGenerator

getOutput() - Method in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceQueueGenerator

getOutput() - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode

getOutput() - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode1v

getOutput() - Method in class org.gcube.dataanalysis.executor.nodes.transducers.OccurrenceMergingNode

getProperties() - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode

getProperties() - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode1v

getProperties() - Method in class org.gcube.dataanalysis.executor.nodes.transducers.OccurrenceMergingNode

getResourceLoad() - Method in class org.gcube.dataanalysis.executor.generators.D4ScienceDistributedProcessing

getResourceLoad() - Method in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceGenerator

getResourceLoad() - Method in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceQueueGenerator

getResourceLoad() - Method in class org.gcube.dataanalysis.executor.job.management.DistributedProcessingAgent

getResources() - Method in class org.gcube.dataanalysis.executor.generators.D4ScienceDistributedProcessing

getResources() - Method in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceGenerator

getResources() - Method in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceQueueGenerator

getResources() - Method in class org.gcube.dataanalysis.executor.job.management.DistributedProcessingAgent

getState() - Method in class org.gcube.dataanalysis.executor.job.management.WorkerWatcher

getStatus() - Method in class org.gcube.dataanalysis.executor.generators.D4ScienceDistributedProcessing

getStatus() - Method in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceGenerator

getStatus() - Method in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceQueueGenerator

getStatus() - Method in class org.gcube.dataanalysis.executor.job.management.DistributedProcessingAgent

getStatus() - Method in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

getStatus() - Method in class org.gcube.dataanalysis.executor.job.management.RemoteJobManager

getStatus() - Method in class org.gcube.dataanalysis.executor.scripts.GetExecuteScript

getString(String) - Static method in class org.gcube.dataanalysis.executor.plugin.ScriptIO

getSupportedAlgorithms() - Method in class org.gcube.dataanalysis.executor.generators.D4ScienceDistributedProcessing

getSupportedAlgorithms() - Method in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceGenerator

getSupportedAlgorithms() - Method in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceQueueGenerator

getSupportedAlgorithms() - Method in class org.gcube.dataanalysis.executor.job.management.DistributedProcessingAgent

getTaskClass() - Method in class org.gcube.dataanalysis.executor.plugin.dummy.DummyScriptPluginContext

getTaskClass() - Method in class org.gcube.dataanalysis.executor.plugin.ScriptPluginContext

getTimeToLive() - Method in class org.gcube.dataanalysis.executor.plugin.dummy.DummyScriptPluginContext

getTimeToLive() - Method in class org.gcube.dataanalysis.executor.plugin.ScriptPluginContext

gscope - Variable in class org.gcube.dataanalysis.executor.job.management.DistributedProcessingAgent

gscope - Variable in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

H

hasResent() - Method in class org.gcube.dataanalysis.executor.job.management.QueueWorkerWatcher

hasResentMessages() - Method in class org.gcube.dataanalysis.executor.job.management.DistributedProcessingAgent

hasResentMessages() - Method in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

I

init() - Method in class org.gcube.dataanalysis.executor.generators.D4ScienceDistributedProcessing

init() - Method in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceGenerator

init() - Method in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceQueueGenerator

init(String, int) - Method in class org.gcube.dataanalysis.executor.job.management.RemoteJobManager

initSingleNode(AlgorithmConfiguration) - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode

initSingleNode(AlgorithmConfiguration) - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode1v

initSingleNode(AlgorithmConfiguration) - Method in class org.gcube.dataanalysis.executor.nodes.transducers.OccurrenceMergingNode

J

jobManager - Variable in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceGenerator

jobManager - Variable in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceQueueGenerator

jobManager - Variable in class org.gcube.dataanalysis.executor.job.management.DistributedProcessingAgent

L

leftSetNumberOfElements - Variable in class org.gcube.dataanalysis.executor.job.management.DistributedProcessingAgent

LocalJobManager - Class in org.gcube.dataanalysis.executor.job.management

LocalJobManager() - Constructor for class org.gcube.dataanalysis.executor.job.management.LocalJobManager

logger - Variable in class org.gcube.dataanalysis.executor.job.management.DistributedProcessingAgent

M

main(String[]) - Static method in class org.gcube.dataanalysis.executor.tests.RegressionTestGenerators

example of parallel processing on a single machine the procedure will generate a new table for a distribution on suitable species

main(String[]) - Static method in class org.gcube.dataanalysis.executor.tests.RegressionTestTransducers

main(String[]) - Static method in class org.gcube.dataanalysis.executor.tests.TestD4ScienceMaps

main(String[]) - Static method in class org.gcube.dataanalysis.executor.tests.TestD4ScienceQueueMaps

main(String[]) - Static method in class org.gcube.dataanalysis.executor.tests.TestD4ScienceQueueMaps2

main(String[]) - Static method in class org.gcube.dataanalysis.executor.tests.TestD4ScienceQueueMaps2_1

main(String[]) - Static method in class org.gcube.dataanalysis.executor.tests.TestD4ScienceQueueMaps2_2

main(String[]) - Static method in class org.gcube.dataanalysis.executor.tests.TestD4ScienceQueueMaps3

main(String[]) - Static method in class org.gcube.dataanalysis.executor.tests.TestD4ScienceQueueMultipleMaps

main(String[]) - Static method in class org.gcube.dataanalysis.executor.tests.TestGetRunningExecutor

main(String[]) - Static method in class org.gcube.dataanalysis.executor.tests.TestLocalJobLaunch

main(String[]) - Static method in class org.gcube.dataanalysis.executor.tests.TestRemoteJobLaunch

main2(String[]) - Static method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode

main2(String[]) - Static method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode1v

mainclass - Variable in class org.gcube.dataanalysis.executor.generators.D4ScienceDistributedProcessing

mainclass - Variable in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceGenerator

mainclass - Variable in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceQueueGenerator

mainclass - Variable in class org.gcube.dataanalysis.executor.job.management.DistributedProcessingAgent

maxElementsAllowedPerJob - Variable in class org.gcube.dataanalysis.executor.job.management.DistributedProcessingAgent

maxFailureTries - Variable in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

maxMessagesAllowedPerJob - Static variable in class org.gcube.dataanalysis.executor.generators.D4ScienceDistributedProcessing

maxNumberOfComputationRetries - Static variable in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

maxNumberOfStages - Static variable in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

maxSilenceTimeBeforeComputationStop - Static variable in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

maxSpeciesAllowedPerJob - Static variable in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceGenerator

maxSpeciesAllowedPerJob - Static variable in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceQueueGenerator

maxwaitingTime - Variable in class org.gcube.dataanalysis.executor.job.management.QueueWorkerWatcher

messagesresent - Variable in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

metainfo - Static variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableFunctions

modelName - Variable in class org.gcube.dataanalysis.executor.job.management.DistributedProcessingAgent

N

numberOfCells - Variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableFunctions

numberOfMessages - Variable in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

numberOfSpecies - Variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableFunctions

O

OccurrenceIntersectionNode - Class in org.gcube.dataanalysis.executor.nodes.transducers

OccurrenceIntersectionNode() - Constructor for class org.gcube.dataanalysis.executor.nodes.transducers.OccurrenceIntersectionNode

OccurrenceMergingNode - Class in org.gcube.dataanalysis.executor.nodes.transducers

OccurrenceMergingNode() - Constructor for class org.gcube.dataanalysis.executor.nodes.transducers.OccurrenceMergingNode

OccurrenceSubtractionNode - Class in org.gcube.dataanalysis.executor.nodes.transducers

OccurrenceSubtractionNode() - Constructor for class org.gcube.dataanalysis.executor.nodes.transducers.OccurrenceSubtractionNode

onException(JMSException) - Method in class org.gcube.dataanalysis.executor.job.management.QueueJobManager.StatusListener

onMessage(Message) - Method in class org.gcube.dataanalysis.executor.job.management.QueueJobManager.StatusListener

operations - Variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode

operations - Variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode1v

org.gcube.dataanalysis.executor.generators - package org.gcube.dataanalysis.executor.generators

org.gcube.dataanalysis.executor.generators.v1 - package org.gcube.dataanalysis.executor.generators.v1

org.gcube.dataanalysis.executor.job.management - package org.gcube.dataanalysis.executor.job.management

org.gcube.dataanalysis.executor.nodes.algorithms - package org.gcube.dataanalysis.executor.nodes.algorithms

org.gcube.dataanalysis.executor.nodes.transducers - package org.gcube.dataanalysis.executor.nodes.transducers

org.gcube.dataanalysis.executor.plugin - package org.gcube.dataanalysis.executor.plugin

org.gcube.dataanalysis.executor.plugin.dummy - package org.gcube.dataanalysis.executor.plugin.dummy

org.gcube.dataanalysis.executor.scripts - package org.gcube.dataanalysis.executor.scripts

org.gcube.dataanalysis.executor.tests - package org.gcube.dataanalysis.executor.tests

OSCommand - Class in org.gcube.dataanalysis.executor.scripts

OSCommand() - Constructor for class org.gcube.dataanalysis.executor.scripts.OSCommand

P

pathToLib - Variable in class org.gcube.dataanalysis.executor.job.management.DistributedProcessingAgent

postProcess(boolean, boolean) - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode

postProcess(boolean, boolean) - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode1v

postProcess(boolean, boolean) - Method in class org.gcube.dataanalysis.executor.nodes.transducers.OccurrenceMergingNode

postProcess1(boolean) - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode1v

postProcess2(boolean) - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode1v

postProcess4(boolean) - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode1v

probabilityInsertionStatement - Static variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableFunctions

processedAreas - Variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableFunctions

produce(String) - Static method in class org.gcube.dataanalysis.executor.tests.TestD4ScienceQueueMaps

producer - Variable in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

purgeQueues() - Method in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

Q

QueueJobManager - Class in org.gcube.dataanalysis.executor.job.management

QueueJobManager(String, int) - Constructor for class org.gcube.dataanalysis.executor.job.management.QueueJobManager

QueueJobManager(String, int, List<EndpointReferenceType>) - Constructor for class org.gcube.dataanalysis.executor.job.management.QueueJobManager

QueueJobManager.Broadcaster - Class in org.gcube.dataanalysis.executor.job.management

QueueJobManager.Broadcaster() - Constructor for class org.gcube.dataanalysis.executor.job.management.QueueJobManager.Broadcaster

QueueJobManager.ComputationTimerWatcher - Class in org.gcube.dataanalysis.executor.job.management

QueueJobManager.ComputationTimerWatcher(long) - Constructor for class org.gcube.dataanalysis.executor.job.management.QueueJobManager.ComputationTimerWatcher

QueueJobManager.StatusListener - Class in org.gcube.dataanalysis.executor.job.management

QueueJobManager.StatusListener() - Constructor for class org.gcube.dataanalysis.executor.job.management.QueueJobManager.StatusListener

queueName - Variable in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

queuePWD - Variable in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

queueResponse - Variable in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

queueURL - Variable in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

queueUSER - Variable in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

queueWatcherMaxwaitingTime - Static variable in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

QueueWorkerWatcher - Class in org.gcube.dataanalysis.executor.job.management

QueueWorkerWatcher(Producer, Map<String, Object>, int) - Constructor for class org.gcube.dataanalysis.executor.job.management.QueueWorkerWatcher

R

rebuildAll(int, int, int, int, String) - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableFunctions

rebuildConfig(String) - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableFunctions

RegressionTestGenerators - Class in org.gcube.dataanalysis.executor.tests

RegressionTestGenerators() - Constructor for class org.gcube.dataanalysis.executor.tests.RegressionTestGenerators

RegressionTestTransducers - Class in org.gcube.dataanalysis.executor.tests

RegressionTestTransducers() - Constructor for class org.gcube.dataanalysis.executor.tests.RegressionTestTransducers

RemoteJobManager - Class in org.gcube.dataanalysis.executor.job.management

RemoteJobManager(String, int) - Constructor for class org.gcube.dataanalysis.executor.job.management.RemoteJobManager

RemoteJobManager(String, int, List<EndpointReferenceType>) - Constructor for class org.gcube.dataanalysis.executor.job.management.RemoteJobManager

resent - Variable in class org.gcube.dataanalysis.executor.job.management.QueueWorkerWatcher

resentMessages - Variable in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

reset() - Method in class org.gcube.dataanalysis.executor.job.management.QueueJobManager.ComputationTimerWatcher

resetTime() - Method in class org.gcube.dataanalysis.executor.job.management.QueueWorkerWatcher

rightSetNumberOfElements - Variable in class org.gcube.dataanalysis.executor.job.management.DistributedProcessingAgent

run() - Method in class org.gcube.dataanalysis.executor.job.management.QueueJobManager.Broadcaster

run() - Method in class org.gcube.dataanalysis.executor.job.management.QueueJobManager.ComputationTimerWatcher

run() - Method in class org.gcube.dataanalysis.executor.plugin.dummy.DummyExecutorScriptPlugin

run() - Method in class org.gcube.dataanalysis.executor.plugin.ExecutorScriptPlugin

run() - Method in class org.gcube.dataanalysis.executor.tests.TestD4ScienceQueueMaps.ThreadGenerator

run() - Method in class org.gcube.dataanalysis.executor.tests.TestD4ScienceQueueMultipleMaps.ThreadGenerator

run() - Method in class org.gcube.dataanalysis.executor.tests.TestGenerator

S

scope - Variable in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

ScriptIO - Class in org.gcube.dataanalysis.executor.plugin

ScriptIO() - Constructor for class org.gcube.dataanalysis.executor.plugin.ScriptIO

ScriptPluginContext - Class in org.gcube.dataanalysis.executor.plugin

ScriptPluginContext() - Constructor for class org.gcube.dataanalysis.executor.plugin.ScriptPluginContext

selectAllSpeciesObservationQuery - Static variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableFunctions

selectAllSpeciesQuery - Static variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableFunctions

session - Variable in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

setConfiguration(AlgorithmConfiguration) - Method in class org.gcube.dataanalysis.executor.generators.D4ScienceDistributedProcessing

setConfiguration(AlgorithmConfiguration) - Method in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceGenerator

setConfiguration(AlgorithmConfiguration) - Method in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceQueueGenerator

setEndPoints(List<String>) - Method in class org.gcube.dataanalysis.executor.job.management.DistributedProcessingAgent

setLogger(Logger) - Method in class org.gcube.dataanalysis.executor.job.management.DistributedProcessingAgent

setmaxTime(long) - Method in class org.gcube.dataanalysis.executor.job.management.QueueJobManager.ComputationTimerWatcher

setNumberOfNodes(int) - Method in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

setNumberOfNodes(int) - Method in class org.gcube.dataanalysis.executor.job.management.RemoteJobManager

setup(AlgorithmConfiguration) - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode

setup(AlgorithmConfiguration) - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode1v

setup(AlgorithmConfiguration) - Method in class org.gcube.dataanalysis.executor.nodes.transducers.OccurrenceMergingNode

shutdown() - Method in class org.gcube.dataanalysis.executor.generators.D4ScienceDistributedProcessing

shutdown() - Method in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceGenerator

shutdown() - Method in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceQueueGenerator

shutdown() - Method in class org.gcube.dataanalysis.executor.job.management.DistributedProcessingAgent

shutdown - Variable in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

singleStepPostprocess(Object) - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode

singleStepPostprocess(Object) - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode1v

singleStepPreprocess(Object, boolean) - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode

singleStepPreprocess(Object, boolean) - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode1v

speciesBlocks - Variable in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceGenerator

speciesBlocks - Variable in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceQueueGenerator

speciesBlocksExecuted - Variable in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceGenerator

speciesBlocksExecuted - Variable in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceQueueGenerator

speciesVectors - Variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableFunctions

status - Variable in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

stop - Variable in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceGenerator

stop - Variable in class org.gcube.dataanalysis.executor.generators.v1.D4ScienceQueueGenerator

stop - Variable in class org.gcube.dataanalysis.executor.job.management.DistributedProcessingAgent

stop() - Method in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

stop() - Method in class org.gcube.dataanalysis.executor.job.management.RemoteJobManager

stop() - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode

stop() - Method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode1v

stop() - Method in class org.gcube.dataanalysis.executor.nodes.transducers.OccurrenceMergingNode

stop() - Method in class org.gcube.dataanalysis.executor.plugin.dummy.DummyExecutorScriptPlugin

stop() - Method in class org.gcube.dataanalysis.executor.plugin.ExecutorScriptPlugin

subdivisiondiv - Variable in class org.gcube.dataanalysis.executor.job.management.DistributedProcessingAgent

T

TestD4ScienceMaps - Class in org.gcube.dataanalysis.executor.tests

TestD4ScienceMaps() - Constructor for class org.gcube.dataanalysis.executor.tests.TestD4ScienceMaps

TestD4ScienceQueueMaps - Class in org.gcube.dataanalysis.executor.tests

TestD4ScienceQueueMaps() - Constructor for class org.gcube.dataanalysis.executor.tests.TestD4ScienceQueueMaps

TestD4ScienceQueueMaps.ThreadGenerator - Class in org.gcube.dataanalysis.executor.tests

TestD4ScienceQueueMaps.ThreadGenerator(String) - Constructor for class org.gcube.dataanalysis.executor.tests.TestD4ScienceQueueMaps.ThreadGenerator

TestD4ScienceQueueMaps2 - Class in org.gcube.dataanalysis.executor.tests

TestD4ScienceQueueMaps2() - Constructor for class org.gcube.dataanalysis.executor.tests.TestD4ScienceQueueMaps2

TestD4ScienceQueueMaps2_1 - Class in org.gcube.dataanalysis.executor.tests

TestD4ScienceQueueMaps2_1() - Constructor for class org.gcube.dataanalysis.executor.tests.TestD4ScienceQueueMaps2_1

TestD4ScienceQueueMaps2_2 - Class in org.gcube.dataanalysis.executor.tests

TestD4ScienceQueueMaps2_2() - Constructor for class org.gcube.dataanalysis.executor.tests.TestD4ScienceQueueMaps2_2

TestD4ScienceQueueMaps3 - Class in org.gcube.dataanalysis.executor.tests

TestD4ScienceQueueMaps3() - Constructor for class org.gcube.dataanalysis.executor.tests.TestD4ScienceQueueMaps3

TestD4ScienceQueueMultipleMaps - Class in org.gcube.dataanalysis.executor.tests

TestD4ScienceQueueMultipleMaps() - Constructor for class org.gcube.dataanalysis.executor.tests.TestD4ScienceQueueMultipleMaps

TestD4ScienceQueueMultipleMaps.ThreadGenerator - Class in org.gcube.dataanalysis.executor.tests

TestD4ScienceQueueMultipleMaps.ThreadGenerator(AlgorithmConfiguration) - Constructor for class org.gcube.dataanalysis.executor.tests.TestD4ScienceQueueMultipleMaps.ThreadGenerator

TestGenerator - Class in org.gcube.dataanalysis.executor.tests

TestGenerator(ComputationalAgent) - Constructor for class org.gcube.dataanalysis.executor.tests.TestGenerator

TestGetRunningExecutor - Class in org.gcube.dataanalysis.executor.tests

TestGetRunningExecutor() - Constructor for class org.gcube.dataanalysis.executor.tests.TestGetRunningExecutor

TestLocalJobLaunch - Class in org.gcube.dataanalysis.executor.tests

TestLocalJobLaunch() - Constructor for class org.gcube.dataanalysis.executor.tests.TestLocalJobLaunch

TestRemoteJobLaunch - Class in org.gcube.dataanalysis.executor.tests

TestRemoteJobLaunch() - Constructor for class org.gcube.dataanalysis.executor.tests.TestRemoteJobLaunch

toInputString(String) - Static method in class org.gcube.dataanalysis.executor.plugin.ScriptIO

totalNumberOfMessages - Variable in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

totalNumberOfStages - Variable in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

type - Variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableFunctions

type - Variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode

type - Variable in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode1v

U

uploadAndExecute(String, String, String, String, String, String, String, int, String, List<String>) - Method in class org.gcube.dataanalysis.executor.job.management.LocalJobManager

uploadAndExecute(String, String, String, String, String, String, String, List<String>, boolean) - Method in class org.gcube.dataanalysis.executor.job.management.RemoteJobManager

uploadAndExecuteChunkized(String, String, String, String, String, String, String, List<String>, String, boolean, boolean) - Method in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

userName - Variable in class org.gcube.dataanalysis.executor.job.management.DistributedProcessingAgent

W

waitForMessages() - Method in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

wasAborted() - Method in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

wasAborted() - Method in class org.gcube.dataanalysis.executor.job.management.RemoteJobManager

WorkerWatcher - Class in org.gcube.dataanalysis.executor.job.management

WorkerWatcher(TaskProxy, Logger) - Constructor for class org.gcube.dataanalysis.executor.job.management.WorkerWatcher

writeOnDB(List<String>, String, SessionFactory) - Static method in class org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableFunctions

Y

yetstopped - Variable in class org.gcube.dataanalysis.executor.job.management.QueueJobManager

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