org.gcube.dataanalysis.executor.generators.v1
Class D4ScienceQueueGenerator

java.lang.Object
  org.gcube.dataanalysis.executor.generators.v1.D4ScienceQueueGenerator

All Implemented Interfaces:

org.gcube.dataanalysis.ecoengine.interfaces.ComputationalAgent, org.gcube.dataanalysis.ecoengine.interfaces.Generator

public class D4ScienceQueueGenerator
extends Object
implements org.gcube.dataanalysis.ecoengine.interfaces.Generator

Field Summary

protected org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration	config
protected static String	defaultJobOutput
protected static String	defaultScriptFile
static boolean	deletefiles
protected org.gcube.dataanalysis.ecoengine.interfaces.SpatialProbabilityDistributionNode	distributionModel
static boolean	forceUpload
protected QueueJobManager	jobManager
protected String	mainclass
protected static int	maxSpeciesAllowedPerJob
protected int	speciesBlocks
protected int	speciesBlocksExecuted
protected boolean	stop

Constructor Summary

D4ScienceQueueGenerator()

D4ScienceQueueGenerator(org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration config)

Method Summary

void	buildScriptFile(String jobName, String jobOutput, String jarsPath, String fullMainClass)
void	compute()
org.gcube.dataanalysis.ecoengine.interfaces.GenericAlgorithm	getAlgorithm()
String	getDescription()
org.gcube.dataanalysis.ecoengine.configuration.INFRASTRUCTURE	getInfrastructure()
List<org.gcube.dataanalysis.ecoengine.datatypes.StatisticalType>	getInputParameters()
String	getLoad()
org.gcube.dataanalysis.ecoengine.datatypes.StatisticalType	getOutput()
String	getResourceLoad()
String	getResources()
float	getStatus()
org.gcube.dataanalysis.ecoengine.configuration.ALG_PROPS[]	getSupportedAlgorithms()
void	init()
void	setConfiguration(org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration config)
void	shutdown()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

config

protected org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration config

distributionModel

protected org.gcube.dataanalysis.ecoengine.interfaces.SpatialProbabilityDistributionNode distributionModel

jobManager

protected QueueJobManager jobManager

defaultJobOutput

protected static String defaultJobOutput

defaultScriptFile

protected static String defaultScriptFile

deletefiles

public static boolean deletefiles

mainclass

protected String mainclass

stop

protected boolean stop

maxSpeciesAllowedPerJob

protected static int maxSpeciesAllowedPerJob

forceUpload

public static boolean forceUpload

speciesBlocksExecuted

protected int speciesBlocksExecuted

speciesBlocks

protected int speciesBlocks

Constructor Detail

D4ScienceQueueGenerator

public D4ScienceQueueGenerator()

D4ScienceQueueGenerator

public D4ScienceQueueGenerator(org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration config)

Method Detail

compute

public void compute()
             throws Exception

Specified by:

compute in interface org.gcube.dataanalysis.ecoengine.interfaces.ComputationalAgent

Throws:

Exception

buildScriptFile

public void buildScriptFile(String jobName,
                            String jobOutput,
                            String jarsPath,
                            String fullMainClass)
                     throws Exception

Throws:

Exception

getInputParameters

public List<org.gcube.dataanalysis.ecoengine.datatypes.StatisticalType> getInputParameters()

Specified by:

getInputParameters in interface org.gcube.dataanalysis.ecoengine.interfaces.ComputationalAgent

getResources

public String getResources()

Specified by:

getResources in interface org.gcube.dataanalysis.ecoengine.interfaces.ComputationalAgent

getStatus

public float getStatus()

Specified by:

getStatus in interface org.gcube.dataanalysis.ecoengine.interfaces.ComputationalAgent

getOutput

public org.gcube.dataanalysis.ecoengine.datatypes.StatisticalType getOutput()

Specified by:

getOutput in interface org.gcube.dataanalysis.ecoengine.interfaces.ComputationalAgent

getSupportedAlgorithms

public org.gcube.dataanalysis.ecoengine.configuration.ALG_PROPS[] getSupportedAlgorithms()

Specified by:

getSupportedAlgorithms in interface org.gcube.dataanalysis.ecoengine.interfaces.Generator

getInfrastructure

public org.gcube.dataanalysis.ecoengine.configuration.INFRASTRUCTURE getInfrastructure()

Specified by:

getInfrastructure in interface org.gcube.dataanalysis.ecoengine.interfaces.ComputationalAgent

init

public void init()
          throws Exception

Specified by:

init in interface org.gcube.dataanalysis.ecoengine.interfaces.ComputationalAgent

Throws:

Exception

setConfiguration

public void setConfiguration(org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration config)

Specified by:

setConfiguration in interface org.gcube.dataanalysis.ecoengine.interfaces.ComputationalAgent

shutdown

public void shutdown()

Specified by:

shutdown in interface org.gcube.dataanalysis.ecoengine.interfaces.ComputationalAgent

getLoad

public String getLoad()

Specified by:

getLoad in interface org.gcube.dataanalysis.ecoengine.interfaces.Generator

getResourceLoad

public String getResourceLoad()

Specified by:

getResourceLoad in interface org.gcube.dataanalysis.ecoengine.interfaces.ComputationalAgent

getAlgorithm

public org.gcube.dataanalysis.ecoengine.interfaces.GenericAlgorithm getAlgorithm()

Specified by:

getAlgorithm in interface org.gcube.dataanalysis.ecoengine.interfaces.Generator

getDescription

public String getDescription()

Specified by:

getDescription in interface org.gcube.dataanalysis.ecoengine.interfaces.ComputationalAgent