org.gcube.dataanalysis.executor.nodes.algorithms

Class AquamapsSuitableFunctions

java.lang.Object

org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableFunctions

public class AquamapsSuitableFunctions
extends Object

Field Summary

Fields

Modifier and Type	Field and Description
HashMap<String,List<Object>>	allSpeciesObservations
ConcurrentHashMap<String,Map<String,Float>>	completeDistribution
org.gcube.dataanalysis.ecoengine.spatialdistributions.AquamapsAlgorithmCore	core
static String	countAll
static String	countAllSpeciesQuery
static String	countCsquareCodeQuery
static String	createTableStatement
static String	csquareCodeQuery
org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration	currentconfig
String	currentFAOAreas
HashMap<String,String>	currentSpeciesBoundingBoxInfo
static String	deleteDuplicates
List<Object>	environmentVectors
static String	metainfo
int	numberOfCells
int	numberOfSpecies
static String	probabilityInsertionStatement
HashMap<String,Object>	processedAreas
static String	selectAllSpeciesObservationQuery
static String	selectAllSpeciesQuery
List<Object>	speciesVectors
String	type

Constructor Summary

Constructors

Constructor and Description
AquamapsSuitableFunctions(org.gcube.dataanalysis.ecoengine.spatialdistributions.AquamapsAlgorithmCore core, String type, org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration config)

Method Summary

Methods

Modifier and Type	Method and Description
float	calcProb(Object species, Object area)
HashMap<String,Integer>	calculateBoundingBox(Object[] csquarecode)
void	dumpAll(String path)
String	getAdditionalInformation(Object species, Object area)
void	getBoundingBoxInformation(Object[] speciesInfoRow, Object[] speciesObservations)
static String	getGeographicalID(Object geoInfo)
static String	getMainInfoID(Object speciesInfo)
void	rebuildAll(int cellOrdinal, int chunksize, int speciesOrdinal, int speciesChunkSize, String pathToFiles)
void	rebuildConfig(String configFile)
static void	writeOnDB(List<String> buffer, String destinationTable, org.hibernate.SessionFactory dbHibConnection)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

countAllSpeciesQuery

public static String countAllSpeciesQuery

countAll

public static String countAll

countCsquareCodeQuery

public static String countCsquareCodeQuery

selectAllSpeciesQuery

public static String selectAllSpeciesQuery

csquareCodeQuery

public static String csquareCodeQuery

createTableStatement

public static String createTableStatement

metainfo

public static String metainfo

selectAllSpeciesObservationQuery

public static String selectAllSpeciesObservationQuery

probabilityInsertionStatement

public static String probabilityInsertionStatement

deleteDuplicates

public static String deleteDuplicates

allSpeciesObservations

public HashMap<String,List<Object>> allSpeciesObservations

speciesVectors

public List<Object> speciesVectors

environmentVectors

public List<Object> environmentVectors

numberOfSpecies

public int numberOfSpecies

numberOfCells

public int numberOfCells

currentconfig

public org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration currentconfig

currentSpeciesBoundingBoxInfo

public HashMap<String,String> currentSpeciesBoundingBoxInfo

currentFAOAreas

public String currentFAOAreas

core

public org.gcube.dataanalysis.ecoengine.spatialdistributions.AquamapsAlgorithmCore core

type

public String type

processedAreas

public HashMap<String,Object> processedAreas

completeDistribution

public ConcurrentHashMap<String,Map<String,Float>> completeDistribution

Constructor Detail

AquamapsSuitableFunctions

public AquamapsSuitableFunctions(org.gcube.dataanalysis.ecoengine.spatialdistributions.AquamapsAlgorithmCore core,
                         String type,
                         org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration config)

Method Detail

calcProb

public float calcProb(Object species,
             Object area)

calculateBoundingBox

public HashMap<String,Integer> calculateBoundingBox(Object[] csquarecode)

getBoundingBoxInformation

public void getBoundingBoxInformation(Object[] speciesInfoRow,
                             Object[] speciesObservations)

writeOnDB

public static void writeOnDB(List<String> buffer,
             String destinationTable,
             org.hibernate.SessionFactory dbHibConnection)

dumpAll

public void dumpAll(String path)
             throws Exception

Throws:

Exception

rebuildConfig

public void rebuildConfig(String configFile)
                   throws Exception

Throws:

Exception

rebuildAll

public void rebuildAll(int cellOrdinal,
              int chunksize,
              int speciesOrdinal,
              int speciesChunkSize,
              String pathToFiles)
                throws Exception

Throws:

Exception

getAdditionalInformation

public String getAdditionalInformation(Object species,
                              Object area)

getMainInfoID

public static String getMainInfoID(Object speciesInfo)

getGeographicalID

public static String getGeographicalID(Object geoInfo)