org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mapping

Class AbstractEcologicalEngineMapper

java.lang.Object

org.n52.wps.server.AbstractDescriptorAlgorithm

org.n52.wps.server.AbstractAnnotatedAlgorithm

org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mapping.AbstractEcologicalEngineMapper

All Implemented Interfaces:

Cancellable, Observable, org.n52.wps.server.IAlgorithm, org.n52.wps.server.observerpattern.ISubject

public class AbstractEcologicalEngineMapper
extends org.n52.wps.server.AbstractAnnotatedAlgorithm
implements Observable, Cancellable

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
class	AbstractEcologicalEngineMapper.StatusUpdater

Nested classes/interfaces inherited from class org.n52.wps.server.AbstractAnnotatedAlgorithm

org.n52.wps.server.AbstractAnnotatedAlgorithm.Proxy

Field Summary

Fields

Modifier and Type	Field and Description
org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration	config
static HashMap<String,DatabaseInfo>	databaseParametersMemoryCache
String	endTime
InfrastructureDialoguer	infrastructureDialoguer
LinkedHashMap<String,Object>	inputs
LinkedHashMap<String,Object>	outputs
static HashMap<String,String>	runningcomputations
String	startTime
LinkedHashMap<String,Long>	times
String	wpsExternalID

Constructor Summary

Constructors

Constructor and Description
AbstractEcologicalEngineMapper()

Method Summary

Modifier and Type	Method and Description
static void	addDatabaseInfo(String scope, DatabaseInfo info)
boolean	cancel()
static List<String>	command(String cmdline, String directory)
static void	deleteGeneratedFiles(List<File> generatedFiles)
void	deleteTemporaryTables(List<String> generatedInputTables)
org.gcube.dataanalysis.ecoengine.interfaces.ComputationalAgent	getComputationalAgent(String algorithmName)
static DatabaseInfo	getDatabaseInfo(String scope)
List<org.gcube.dataanalysis.ecoengine.datatypes.StatisticalType>	getInputParameters(String algorithmName)
org.gcube.dataanalysis.ecoengine.datatypes.StatisticalType	getOutput(String algorithmName)
boolean	isCancelled()
void	manageUserToken()
void	run()
void	setEnvironmentVariableManager(EnvironmentVariableManager env)
void	setObserver(Observer o)
void	setWpsExternalID(String wpsExternalID)
void	updateComputationOnWS(float status, String exception)
void	updateComputationOnWS(float status, String exception, List<StoredData> inputData, List<File> generatedData)
void	updateStatus(float status, boolean canWrite)

Methods inherited from class org.n52.wps.server.AbstractAnnotatedAlgorithm

createAlgorithmDescriptor, getAlgorithmClass, getAlgorithmInstance, run

Methods inherited from class org.n52.wps.server.AbstractDescriptorAlgorithm

addError, addObserver, getAlgorithmDescriptor, getDescription, getErrors, getInputDataType, getOutputDataType, getState, getWellKnownName, notifyObservers, processDescriptionIsValid, removeObserver, update

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

inputs

public LinkedHashMap<String,Object> inputs

outputs

public LinkedHashMap<String,Object> outputs

times

public LinkedHashMap<String,Long> times

startTime

public String startTime

endTime

public String endTime

databaseParametersMemoryCache

public static HashMap<String,DatabaseInfo> databaseParametersMemoryCache

runningcomputations

public static HashMap<String,String> runningcomputations

wpsExternalID

public String wpsExternalID

config

public org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration config

infrastructureDialoguer

public InfrastructureDialoguer infrastructureDialoguer

Constructor Detail

AbstractEcologicalEngineMapper

public AbstractEcologicalEngineMapper()

Method Detail

setWpsExternalID

public void setWpsExternalID(String wpsExternalID)

getDatabaseInfo

public static DatabaseInfo getDatabaseInfo(String scope)

addDatabaseInfo

public static void addDatabaseInfo(String scope,
                                   DatabaseInfo info)

getComputationalAgent

public org.gcube.dataanalysis.ecoengine.interfaces.ComputationalAgent getComputationalAgent(String algorithmName)
                                                                                     throws Exception

Throws:

Exception

getInputParameters

public List<org.gcube.dataanalysis.ecoengine.datatypes.StatisticalType> getInputParameters(String algorithmName)
                                                                                    throws Exception

Throws:

Exception

getOutput

public org.gcube.dataanalysis.ecoengine.datatypes.StatisticalType getOutput(String algorithmName)
                                                                     throws Exception

Throws:

Exception

deleteTemporaryTables

public void deleteTemporaryTables(List<String> generatedInputTables)
                           throws Exception

Throws:

Exception

deleteGeneratedFiles

public static void deleteGeneratedFiles(List<File> generatedFiles)
                                 throws Exception

Throws:

Exception

manageUserToken

public void manageUserToken()

updateStatus

public void updateStatus(float status,
                         boolean canWrite)

setEnvironmentVariableManager

public void setEnvironmentVariableManager(EnvironmentVariableManager env)

updateComputationOnWS

public void updateComputationOnWS(float status,
                                  String exception)

updateComputationOnWS

public void updateComputationOnWS(float status,
                                  String exception,
                                  List<StoredData> inputData,
                                  List<File> generatedData)

run

public void run()
         throws Exception

Throws:

Exception

command

public static List<String> command(String cmdline,
                                   String directory)

setObserver

public void setObserver(Observer o)

Specified by:

setObserver in interface Observable

cancel

public boolean cancel()

Specified by:

cancel in interface Cancellable

isCancelled

public boolean isCancelled()

Specified by:

isCancelled in interface Cancellable