org.gcube.dataanalysis.executor.nodes.transducers.bionym

Class BionymWorkflow

java.lang.Object

org.gcube.dataanalysis.ecoengine.interfaces.ActorNode

org.gcube.dataanalysis.executor.nodes.transducers.bionym.BionymWorkflow

All Implemented Interfaces:

org.gcube.dataanalysis.ecoengine.interfaces.GenericAlgorithm

public class BionymWorkflow
extends org.gcube.dataanalysis.ecoengine.interfaces.ActorNode

Field Summary

Fields

Modifier and Type	Field and Description
protected org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration	currentconfig
protected org.hibernate.SessionFactory	dbconnection
static String	destinationTableLable
static String	destinationTableParam
static String	doPreprocessParam
static String	maxMatchesParam
static String	originTableParam
static String	parserParam
int	prevbroadcastTimePeriod
int	prevmaxMessages
int	prevmaxNumberOfStages
static String	pruningThresholdParam
static String	rawnamesColumnParam
static String	referenceParam
static String	soundexweightParam

Constructor Summary

Constructors

Constructor and Description
BionymWorkflow()

Method Summary

Modifier and Type	Method and Description
StringBuffer	executeBionymWorkflow(String rawspeciesname, String sandboxfolder, String preprocessor, boolean[] enablematchers, float soundexweightF, int maxResults, float pruningThreshold)
int	executeNode(int leftStartIndex, int numberOfLeftElementsToProcess, int rightStartIndex, int numberOfRightElementsToProcess, boolean duplicate, String sandboxFolder, String nodeConfigurationFileObject, String logfileNameToProduce)
void	filterMatchedTuples(List<org.gcube.dataanalysis.ecoengine.utils.Tuple<String>> tuples)
String	getDescription()
List<org.gcube.dataanalysis.ecoengine.datatypes.StatisticalType>	getInputParameters()
float	getInternalStatus()
String	getName()
int	getNumberOfLeftElements()
int	getNumberOfRightElements()
org.gcube.dataanalysis.ecoengine.datatypes.StatisticalType	getOutput()
org.gcube.dataanalysis.ecoengine.configuration.ALG_PROPS[]	getProperties()
void	initSingleNode(org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration config)
static void	mainTEST(String[] args)
void	postProcess(boolean manageDuplicates, boolean manageFault)
void	setup(org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration config)
void	stop()

Methods inherited from class org.gcube.dataanalysis.ecoengine.interfaces.ActorNode

main

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

currentconfig

protected org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration currentconfig

dbconnection

protected org.hibernate.SessionFactory dbconnection

prevbroadcastTimePeriod

public int prevbroadcastTimePeriod

prevmaxNumberOfStages

public int prevmaxNumberOfStages

prevmaxMessages

public int prevmaxMessages

destinationTableParam

public static String destinationTableParam

destinationTableLable

public static String destinationTableLable

originTableParam

public static String originTableParam

rawnamesColumnParam

public static String rawnamesColumnParam

parserParam

public static String parserParam

referenceParam

public static String referenceParam

soundexweightParam

public static String soundexweightParam

doPreprocessParam

public static String doPreprocessParam

maxMatchesParam

public static String maxMatchesParam

pruningThresholdParam

public static String pruningThresholdParam

Constructor Detail

BionymWorkflow

public BionymWorkflow()

Method Detail

getProperties

public org.gcube.dataanalysis.ecoengine.configuration.ALG_PROPS[] getProperties()

getName

public String getName()

getDescription

public String getDescription()

getInputParameters

public List<org.gcube.dataanalysis.ecoengine.datatypes.StatisticalType> getInputParameters()

getOutput

public org.gcube.dataanalysis.ecoengine.datatypes.StatisticalType getOutput()

initSingleNode

public void initSingleNode(org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration config)

Specified by:

initSingleNode in class org.gcube.dataanalysis.ecoengine.interfaces.ActorNode

getInternalStatus

public float getInternalStatus()

Specified by:

getInternalStatus in class org.gcube.dataanalysis.ecoengine.interfaces.ActorNode

filterMatchedTuples

public void filterMatchedTuples(List<org.gcube.dataanalysis.ecoengine.utils.Tuple<String>> tuples)

executeBionymWorkflow

public StringBuffer executeBionymWorkflow(String rawspeciesname,
                                          String sandboxfolder,
                                          String preprocessor,
                                          boolean[] enablematchers,
                                          float soundexweightF,
                                          int maxResults,
                                          float pruningThreshold)
                                   throws Exception

Throws:

Exception

executeNode

public int executeNode(int leftStartIndex,
                       int numberOfLeftElementsToProcess,
                       int rightStartIndex,
                       int numberOfRightElementsToProcess,
                       boolean duplicate,
                       String sandboxFolder,
                       String nodeConfigurationFileObject,
                       String logfileNameToProduce)

Specified by:

executeNode in class org.gcube.dataanalysis.ecoengine.interfaces.ActorNode

setup

public void setup(org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration config)
           throws Exception

Specified by:

setup in class org.gcube.dataanalysis.ecoengine.interfaces.ActorNode

Throws:

Exception

getNumberOfRightElements

public int getNumberOfRightElements()

Specified by:

getNumberOfRightElements in class org.gcube.dataanalysis.ecoengine.interfaces.ActorNode

getNumberOfLeftElements

public int getNumberOfLeftElements()

Specified by:

getNumberOfLeftElements in class org.gcube.dataanalysis.ecoengine.interfaces.ActorNode

stop

public void stop()

Specified by:

stop in class org.gcube.dataanalysis.ecoengine.interfaces.ActorNode

postProcess

public void postProcess(boolean manageDuplicates,
                        boolean manageFault)

Specified by:

postProcess in class org.gcube.dataanalysis.ecoengine.interfaces.ActorNode

mainTEST

public static void mainTEST(String[] args)
                     throws Exception

Throws:

Exception