org.gcube.dataanalysis.executor.nodes.transducers.bionym.utils

Class YasmeenFileTools

java.lang.Object

org.gcube.dataanalysis.executor.nodes.transducers.bionym.utils.YasmeenFileTools

public class YasmeenFileTools
extends Object

Constructor Summary

Constructors

Constructor and Description
YasmeenFileTools()

Method Summary

Modifier and Type	Method and Description
static void	callYasmeen(String command)
static MatcherOutput	getYasmeenMatcherOutput(String sandboxFolder, String filename)
static MatcherInput	getYasmeenParserOutput(String sandboxFolder, String filename)
static void	writeYasmeenMatcherInput(String sandboxFolder, String filename, String parserName, MatcherInput input) Deprecated.
static void	writeYasmeenParserInput(String sandboxFolder, String filename, List<String> rawNames)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

YasmeenFileTools

public YasmeenFileTools()

Method Detail

getYasmeenParserOutput

public static MatcherInput getYasmeenParserOutput(String sandboxFolder,
                                                  String filename)
                                           throws Exception

Throws:

Exception

getYasmeenMatcherOutput

public static MatcherOutput getYasmeenMatcherOutput(String sandboxFolder,
                                                    String filename)
                                             throws Exception

Throws:

Exception

writeYasmeenParserInput

public static void writeYasmeenParserInput(String sandboxFolder,
                                           String filename,
                                           List<String> rawNames)
                                    throws Exception

Throws:

Exception

writeYasmeenMatcherInput

@Deprecated
public static void writeYasmeenMatcherInput(String sandboxFolder,
                                                        String filename,
                                                        String parserName,
                                                        MatcherInput input)
                                                 throws Exception

Deprecated.

Throws:

Exception

callYasmeen

public static void callYasmeen(String command)
                        throws Exception

Throws:

Exception