Package org.gcube.dataanalysis.executor.nodes.algorithms

Class AquamapsSuitableNode1v

java.lang.Object

org.gcube.dataanalysis.ecoengine.interfaces.SpatialProbabilityDistributionNode

org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode1v

All Implemented Interfaces:

org.gcube.dataanalysis.ecoengine.interfaces.AlgorithmDescriptor, org.gcube.dataanalysis.ecoengine.interfaces.GenericAlgorithm

public class AquamapsSuitableNode1v
extends org.gcube.dataanalysis.ecoengine.interfaces.SpatialProbabilityDistributionNode

Field Summary

Fields

Modifier and Type	Field	Description
protected org.gcube.dataanalysis.ecoengine.spatialdistributions.AquamapsAlgorithmCore	core
protected String	countCellsQuery
protected String	countSpeciesQuery
protected String	createTableStatement
protected org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration	currentconfig
protected org.hibernate.SessionFactory	dbHibConnection
protected String	destinationTable
protected String	destinationTableLabel
protected AquamapsSuitableFunctions	operations
protected String	type

Constructor Summary

Constructors

Constructor	Description
AquamapsSuitableNode1v()

Method Summary

Modifier and Type	Method	Description
int	executeNode(int cellOrdinal, int chunksize, int speciesOrdinal, int speciesChunkSize, boolean duplicate, String pathToFiles, String nodeConfigurationFileObject, String logfile)
Queue<String>	filterProbabilitySet(Queue<String> probabiltyRows)
String	getDescription()
List<org.gcube.dataanalysis.ecoengine.datatypes.StatisticalType>	getInputParameters()
float	getInternalStatus()
String	getName()
int	getNumberOfGeoInfo()
int	getNumberOfProcessedSpecies()
int	getNumberOfSpecies()
org.gcube.dataanalysis.ecoengine.datatypes.StatisticalType	getOutput()
org.gcube.dataanalysis.ecoengine.configuration.ALG_PROPS[]	getProperties()
void	initSingleNode(org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration config)
static void	main2(String[] args)
void	postProcess(boolean manageDuplicates, boolean manageFault)
void	postProcess1(boolean manageDuplicates)
void	postProcess2(boolean manageDuplicates)
void	postProcess4(boolean manageDuplicates)
void	setup(org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration config)
void	singleStepPostprocess(Object species)
void	singleStepPreprocess(Object species, boolean duplicate)
void	stop()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

countSpeciesQuery

protected String countSpeciesQuery

countCellsQuery

protected String countCellsQuery

createTableStatement

protected String createTableStatement

destinationTable

protected String destinationTable

destinationTableLabel

protected String destinationTableLabel

type

protected String type

core

protected org.gcube.dataanalysis.ecoengine.spatialdistributions.AquamapsAlgorithmCore core

currentconfig

protected org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration currentconfig

operations

protected AquamapsSuitableFunctions operations

dbHibConnection

protected org.hibernate.SessionFactory dbHibConnection

Constructor Detail

AquamapsSuitableNode1v

public AquamapsSuitableNode1v()

Method Detail

setup

public void setup(org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration config)
           throws Exception

Specified by:

setup in class org.gcube.dataanalysis.ecoengine.interfaces.SpatialProbabilityDistributionNode

Throws:

Exception

initSingleNode

public void initSingleNode(org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration config)

Specified by:

initSingleNode in class org.gcube.dataanalysis.ecoengine.interfaces.SpatialProbabilityDistributionNode

executeNode

public int executeNode(int cellOrdinal,
                       int chunksize,
                       int speciesOrdinal,
                       int speciesChunkSize,
                       boolean duplicate,
                       String pathToFiles,
                       String nodeConfigurationFileObject,
                       String logfile)

Specified by:

executeNode in class org.gcube.dataanalysis.ecoengine.interfaces.SpatialProbabilityDistributionNode

getInputParameters

public List<org.gcube.dataanalysis.ecoengine.datatypes.StatisticalType> getInputParameters()

filterProbabilitySet

public Queue<String> filterProbabilitySet(Queue<String> probabiltyRows)

getInternalStatus

public float getInternalStatus()

Specified by:

getInternalStatus in class org.gcube.dataanalysis.ecoengine.interfaces.SpatialProbabilityDistributionNode

getProperties

public org.gcube.dataanalysis.ecoengine.configuration.ALG_PROPS[] getProperties()

getName

public String getName()

getDescription

public String getDescription()

postProcess

public void postProcess(boolean manageDuplicates,
                        boolean manageFault)

Specified by:

postProcess in class org.gcube.dataanalysis.ecoengine.interfaces.SpatialProbabilityDistributionNode

postProcess4

public void postProcess4(boolean manageDuplicates)

postProcess1

public void postProcess1(boolean manageDuplicates)

postProcess2

public void postProcess2(boolean manageDuplicates)

main2

public static void main2(String[] args)
                  throws Exception

Throws:

Exception

singleStepPreprocess

public void singleStepPreprocess(Object species,
                                 boolean duplicate)
                          throws Exception

Throws:

Exception

singleStepPostprocess

public void singleStepPostprocess(Object species)

getOutput

public org.gcube.dataanalysis.ecoengine.datatypes.StatisticalType getOutput()

getNumberOfSpecies

public int getNumberOfSpecies()

Specified by:

getNumberOfSpecies in class org.gcube.dataanalysis.ecoengine.interfaces.SpatialProbabilityDistributionNode

getNumberOfGeoInfo

public int getNumberOfGeoInfo()

Specified by:

getNumberOfGeoInfo in class org.gcube.dataanalysis.ecoengine.interfaces.SpatialProbabilityDistributionNode

getNumberOfProcessedSpecies

public int getNumberOfProcessedSpecies()

Specified by:

getNumberOfProcessedSpecies in class org.gcube.dataanalysis.ecoengine.interfaces.SpatialProbabilityDistributionNode

stop

public void stop()

Specified by:

stop in class org.gcube.dataanalysis.ecoengine.interfaces.SpatialProbabilityDistributionNode