Class CometMatcherManager
- java.lang.Object
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- org.gcube.dataanalysis.executor.nodes.transducers.bionym.CometMatcherManager
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public class CometMatcherManager extends Object
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Nested Class Summary
Nested Classes Modifier and Type Class Description static classCometMatcherManager.Parsersstatic classCometMatcherManager.Referencestatic classCometMatcherManager.Weights
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Constructor Summary
Constructors Constructor Description CometMatcherManager()
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Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description static voidcometMatch(String pathToComet, String parser, String reference, String outFile, String inFile, float sxnw, int maxresults)static voidcometParse(String pathToComet, String parser, String outFile, String inFile)static voiddumpCometInput(String inputFile, List<org.gcube.dataanalysis.ecoengine.utils.Tuple<String>> rawNames)List<String>getMatches()List<String>getScores()List<org.gcube.dataanalysis.ecoengine.utils.Tuple<String>>match(String parser, String reference, String sandboxFolder, List<org.gcube.dataanalysis.ecoengine.utils.Tuple<String>> inputNamesList, float soundexweightF, int maxResults)List<org.gcube.dataanalysis.ecoengine.utils.Tuple<String>>parseCometOutput(String parserOutput)static List<org.gcube.dataanalysis.ecoengine.utils.Tuple<String>>parseCometParserOutput(String parserOutput)
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Method Detail
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cometParse
public static void cometParse(String pathToComet, String parser, String outFile, String inFile) throws Exception
- Throws:
Exception
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cometMatch
public static void cometMatch(String pathToComet, String parser, String reference, String outFile, String inFile, float sxnw, int maxresults) throws Exception
- Throws:
Exception
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parseCometParserOutput
public static List<org.gcube.dataanalysis.ecoengine.utils.Tuple<String>> parseCometParserOutput(String parserOutput) throws Exception
- Throws:
Exception
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parseCometOutput
public List<org.gcube.dataanalysis.ecoengine.utils.Tuple<String>> parseCometOutput(String parserOutput) throws Exception
- Throws:
Exception
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dumpCometInput
public static void dumpCometInput(String inputFile, List<org.gcube.dataanalysis.ecoengine.utils.Tuple<String>> rawNames) throws Exception
- Throws:
Exception
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