Package org.gcube.dataanalysis.executor.util

Class LocalRScriptsManager

java.lang.Object

org.gcube.dataanalysis.executor.util.LocalRScriptsManager

public class LocalRScriptsManager
extends Object

Field Summary

Fields

Modifier and Type	Field	Description
String	currentOutputFileName
String	currentOutputURL
float	status

Constructor Summary

Constructors

Constructor	Description
LocalRScriptsManager()

Method Summary

Modifier and Type	Method	Description
void	executeRScript(org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration config, String scriptName, String inputFileURL, HashMap<String,String> inputParameters, String defaultInputFile, String defaultOutputFile, HashMap<String,String> codeInjections, boolean mustReturnAFile, boolean uploadOutputOnStorage, boolean deletefiles, String sandboxFolder)
void	executeRScript(org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration config, String scriptName, String inputFileURL, HashMap<String,String> inputParameters, String defaultInputFile, String defaultOutputFile, HashMap<String,String> codeInjections, boolean mustReturnAFile, boolean uploadOutputOnStorage, String sandboxFolder)
String	executeRScript(org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration config, String scriptName, String inputFileURL, HashMap<String,String> inputParameters, HashMap<String,String> outputParameters, String defaultInputFile, String defaultOutputFile, HashMap<String,String> codeInjections, boolean mustReturnAFile, boolean uploadOutputOnStorage, boolean deletefiles, String sandboxFolder)
void	executeRScript(org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration config, String scriptName, String inputFileURL, HashMap<String,String> inputParameters, HashMap<String,String> outputParameters, String defaultInputFile, String defaultOutputFile, HashMap<String,String> codeInjections, boolean mustReturnAFile, boolean uploadOutputOnStorage, String sandboxFolder)
String	getCurrentOutputFileName()
String	getCurrentOutputURL()
float	getStatus()
String	printRConsole(Process process)
void	setCurrentOutputFileName(String currentOutputFileName)
void	setCurrentOutputURL(String currentOutputURL)
void	setStatus(float status)
void	stop()
static void	substituteStringInFile(String file, String newFile, String s, String sub, boolean regex)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

status

public float status

currentOutputURL

public String currentOutputURL

currentOutputFileName

public String currentOutputFileName

Constructor Detail

LocalRScriptsManager

public LocalRScriptsManager()

Method Detail

getCurrentOutputURL

public String getCurrentOutputURL()

setCurrentOutputURL

public void setCurrentOutputURL(String currentOutputURL)

getCurrentOutputFileName

public String getCurrentOutputFileName()

setCurrentOutputFileName

public void setCurrentOutputFileName(String currentOutputFileName)

getStatus

public float getStatus()

setStatus

public void setStatus(float status)

substituteStringInFile

public static void substituteStringInFile(String file,
                                          String newFile,
                                          String s,
                                          String sub,
                                          boolean regex)
                                   throws Exception

Throws:

Exception

printRConsole

public String printRConsole(Process process)

executeRScript

public void executeRScript(org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration config,
                           String scriptName,
                           String inputFileURL,
                           HashMap<String,String> inputParameters,
                           String defaultInputFile,
                           String defaultOutputFile,
                           HashMap<String,String> codeInjections,
                           boolean mustReturnAFile,
                           boolean uploadOutputOnStorage,
                           String sandboxFolder)
                    throws Exception

Throws:

Exception

executeRScript

public void executeRScript(org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration config,
                           String scriptName,
                           String inputFileURL,
                           HashMap<String,String> inputParameters,
                           HashMap<String,String> outputParameters,
                           String defaultInputFile,
                           String defaultOutputFile,
                           HashMap<String,String> codeInjections,
                           boolean mustReturnAFile,
                           boolean uploadOutputOnStorage,
                           String sandboxFolder)
                    throws Exception

Throws:

Exception

executeRScript

public void executeRScript(org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration config,
                           String scriptName,
                           String inputFileURL,
                           HashMap<String,String> inputParameters,
                           String defaultInputFile,
                           String defaultOutputFile,
                           HashMap<String,String> codeInjections,
                           boolean mustReturnAFile,
                           boolean uploadOutputOnStorage,
                           boolean deletefiles,
                           String sandboxFolder)
                    throws Exception

Throws:

Exception

executeRScript

public String executeRScript(org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration config,
                             String scriptName,
                             String inputFileURL,
                             HashMap<String,String> inputParameters,
                             HashMap<String,String> outputParameters,
                             String defaultInputFile,
                             String defaultOutputFile,
                             HashMap<String,String> codeInjections,
                             boolean mustReturnAFile,
                             boolean uploadOutputOnStorage,
                             boolean deletefiles,
                             String sandboxFolder)
                      throws Exception

Throws:

Exception

stop

public void stop()