org.gcube.dataanalysis.ecoengine.spatialdistributions

Class AquamapsSuitable

java.lang.Object

org.gcube.dataanalysis.ecoengine.spatialdistributions.AquamapsSuitable

All Implemented Interfaces:

AlgorithmDescriptor, GenericAlgorithm, SpatialProbabilityDistributionTable

Direct Known Subclasses:

AquamapsNative, AquamapsNNSuitable, AquamapsSuitable2050

public class AquamapsSuitable
extends Object
implements SpatialProbabilityDistributionTable

Field Summary

Fields

Modifier and Type	Field and Description
protected HashMap<String,List<Object>>	allSpeciesObservations
protected String	currentFAOAreas
protected HashMap<String,String>	currentSpeciesBoundingBoxInfo
protected String	type

Constructor Summary

Constructors

Constructor and Description
AquamapsSuitable()

Method Summary

Modifier and Type	Method and Description
float	calcProb(Object species, Object area)
HashMap<String,Integer>	calculateBoundingBox(Object[] csquarecode)
Queue<String>	filterProbabilitySet(Queue<String> probabiltyRows)
String	filterProbabiltyRow(String probabiltyRow)
static String	generateMaxMinHspec(String minmaxTableName, String hspenTable, String occurrencePointsTable, org.hibernate.SessionFactory dbHibConnection)
String	getAdditionalInformation(Object species, Object area)
String	getAdditionalMetaInformation()
void	getBoundingBoxInformation(Object[] speciesInfoRow, Object[] speciesObservations)
String	getDescription()
String	getDistributionTableStatement()
String	getGeographicalID(Object geoInfo)
String	getGeographicalInfoQuery()
List<StatisticalType>	getInputParameters()
float	getInternalStatus()
String	getMainInfoID(Object speciesInfo)
String	getMainInfoQuery()
String	getName()
StatisticalType	getOutput()
ALG_PROPS[]	getProperties()
void	init(AlgorithmConfiguration config, org.hibernate.SessionFactory dbHibConnection)
boolean	isSynchronousProbabilityWrite()
void	postProcess()
void	singleStepPostprocess(Object species, Object area)
void	singleStepPreprocess(Object species, Object allAreasInformation)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

currentFAOAreas

protected String currentFAOAreas

currentSpeciesBoundingBoxInfo

protected HashMap<String,String> currentSpeciesBoundingBoxInfo

allSpeciesObservations

protected HashMap<String,List<Object>> allSpeciesObservations

type

protected String type

Constructor Detail

AquamapsSuitable

public AquamapsSuitable()

Method Detail

generateMaxMinHspec

public static String generateMaxMinHspec(String minmaxTableName,
                                         String hspenTable,
                                         String occurrencePointsTable,
                                         org.hibernate.SessionFactory dbHibConnection)

init

public void init(AlgorithmConfiguration config,
                 org.hibernate.SessionFactory dbHibConnection)

Specified by:

init in interface SpatialProbabilityDistributionTable

getMainInfoQuery

public String getMainInfoQuery()

Specified by:

getMainInfoQuery in interface SpatialProbabilityDistributionTable

getGeographicalInfoQuery

public String getGeographicalInfoQuery()

Specified by:

getGeographicalInfoQuery in interface SpatialProbabilityDistributionTable

calcProb

public float calcProb(Object species,
                      Object area)

Specified by:

calcProb in interface SpatialProbabilityDistributionTable

getAdditionalMetaInformation

public String getAdditionalMetaInformation()

Specified by:

getAdditionalMetaInformation in interface SpatialProbabilityDistributionTable

getAdditionalInformation

public String getAdditionalInformation(Object species,
                                       Object area)

Specified by:

getAdditionalInformation in interface SpatialProbabilityDistributionTable

postProcess

public void postProcess()

Specified by:

postProcess in interface SpatialProbabilityDistributionTable

getDistributionTableStatement

public String getDistributionTableStatement()

Specified by:

getDistributionTableStatement in interface SpatialProbabilityDistributionTable

getMainInfoID

public String getMainInfoID(Object speciesInfo)

Specified by:

getMainInfoID in interface SpatialProbabilityDistributionTable

getGeographicalID

public String getGeographicalID(Object geoInfo)

Specified by:

getGeographicalID in interface SpatialProbabilityDistributionTable

calculateBoundingBox

public HashMap<String,Integer> calculateBoundingBox(Object[] csquarecode)

getBoundingBoxInformation

public void getBoundingBoxInformation(Object[] speciesInfoRow,
                                      Object[] speciesObservations)

singleStepPreprocess

public void singleStepPreprocess(Object species,
                                 Object allAreasInformation)

Specified by:

singleStepPreprocess in interface SpatialProbabilityDistributionTable

singleStepPostprocess

public void singleStepPostprocess(Object species,
                                  Object area)

Specified by:

singleStepPostprocess in interface SpatialProbabilityDistributionTable

isSynchronousProbabilityWrite

public boolean isSynchronousProbabilityWrite()

Specified by:

isSynchronousProbabilityWrite in interface SpatialProbabilityDistributionTable

filterProbabiltyRow

public String filterProbabiltyRow(String probabiltyRow)

Specified by:

filterProbabiltyRow in interface SpatialProbabilityDistributionTable

filterProbabilitySet

public Queue<String> filterProbabilitySet(Queue<String> probabiltyRows)

Specified by:

filterProbabilitySet in interface SpatialProbabilityDistributionTable

getInternalStatus

public float getInternalStatus()

Specified by:

getInternalStatus in interface SpatialProbabilityDistributionTable

getProperties

public ALG_PROPS[] getProperties()

Specified by:

getProperties in interface GenericAlgorithm

Specified by:

getProperties in interface SpatialProbabilityDistributionTable

getName

public String getName()

Specified by:

getName in interface GenericAlgorithm

getDescription

public String getDescription()

Specified by:

getDescription in interface AlgorithmDescriptor

getInputParameters

public List<StatisticalType> getInputParameters()

Specified by:

getInputParameters in interface AlgorithmDescriptor

getOutput

public StatisticalType getOutput()

Specified by:

getOutput in interface AlgorithmDescriptor