Serialized Form (ecological-engine 1.14.1-SNAPSHOT API)

Package org.gcube.contentmanagement.graphtools.abstracts
- Class org.gcube.contentmanagement.graphtools.abstracts.GenericStandaloneGraph extends org.jfree.ui.ApplicationFrame implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - big
```
boolean big
```
Package org.gcube.contentmanagement.graphtools.plotting.demo
- Class org.gcube.contentmanagement.graphtools.plotting.demo.PieChartDemo1 extends org.jfree.ui.ApplicationFrame implements Serializable
- Class org.gcube.contentmanagement.graphtools.plotting.demo.SpiderWebDemo1 extends org.jfree.ui.ApplicationFrame implements Serializable
- Class org.gcube.contentmanagement.graphtools.plotting.demo.SpiderWebPlot extends org.jfree.chart.plot.Plot implements Serializable
  
  serialVersionUID:
  
  -5376340422031599463L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream stream)
                 throws IOException,
                        ClassNotFoundException
```
      Provides serialization support.
      
      Throws:
      
      IOException - if there is an I/O error.
      
      ClassNotFoundException - if there is a classpath problem.
    - writeObject
```
private void writeObject(ObjectOutputStream stream)
                  throws IOException
```
      Provides serialization support.
      
      Throws:
      
      IOException - if there is an I/O error.
  - Serialized Fields
    - headPercent
```
double headPercent
```
      The head radius as a percentage of the available drawing area.
    - interiorGap
```
double interiorGap
```
      The space left around the outside of the plot as a percentage.
    - axisLabelGap
```
double axisLabelGap
```
      The gap between the labels and the axes as a %age of the radius.
    - dataset
```
org.jfree.data.category.CategoryDataset dataset
```
      The dataset.
    - maxValue
```
double maxValue
```
      The maximum value we are plotting against on each category axis
    - dataExtractOrder
```
org.jfree.util.TableOrder dataExtractOrder
```
      The data extract order (BY_ROW or BY_COLUMN). This denotes whether the data series are stored in rows (in which case the category names are derived from the column keys) or in columns (in which case the category names are derived from the row keys).
    - startAngle
```
double startAngle
```
      The starting angle.
    - direction
```
org.jfree.util.Rotation direction
```
      The direction for drawing the radar axis & plots.
    - seriesPaintList
```
org.jfree.util.PaintList seriesPaintList
```
      The series paint list.
    - seriesOutlinePaintList
```
org.jfree.util.PaintList seriesOutlinePaintList
```
      The series outline paint list.
    - seriesOutlineStrokeList
```
org.jfree.util.StrokeList seriesOutlineStrokeList
```
      The series outline stroke list.
    - labelFont
```
Font labelFont
```
      The font used to display the category labels.
    - labelGenerator
```
org.jfree.chart.labels.CategoryItemLabelGenerator labelGenerator
```
      The label generator.
    - webFilled
```
boolean webFilled
```
      controls if the web polygons are filled or not
    - toolTipGenerator
```
org.jfree.chart.labels.CategoryToolTipGenerator toolTipGenerator
```
      A tooltip generator for the plot (null permitted).
    - urlGenerator
```
org.jfree.chart.urls.CategoryURLGenerator urlGenerator
```
      A URL generator for the plot (null permitted).
- Class org.gcube.contentmanagement.graphtools.plotting.demo.TimeSeriesChartDemo1 extends org.jfree.ui.ApplicationFrame implements Serializable
Package org.gcube.contentmanagement.graphtools.plotting.graphs
- Class org.gcube.contentmanagement.graphtools.plotting.graphs.GaussianDistributionGraph extends GenericStandaloneGraph implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - mean
```
double mean
```
    - variance
```
double variance
```
- Class org.gcube.contentmanagement.graphtools.plotting.graphs.HistogramGraph extends GenericStandaloneGraph implements Serializable
  
  serialVersionUID:
  
  1L
- Class org.gcube.contentmanagement.graphtools.plotting.graphs.LineGraph extends GenericStandaloneGraph implements Serializable
  
  serialVersionUID:
  
  1L
- Class org.gcube.contentmanagement.graphtools.plotting.graphs.NumericSeriesGraph extends GenericStandaloneGraph implements Serializable
  
  serialVersionUID:
  
  1L
- Class org.gcube.contentmanagement.graphtools.plotting.graphs.PieGraph extends GenericStandaloneGraph implements Serializable
  
  serialVersionUID:
  
  1L
- Class org.gcube.contentmanagement.graphtools.plotting.graphs.RadarGraph extends GenericStandaloneGraph implements Serializable
  
  serialVersionUID:
  
  1L
- Class org.gcube.contentmanagement.graphtools.plotting.graphs.ScatterGraphGeneric extends GenericStandaloneGraph implements Serializable
  
  serialVersionUID:
  
  1L
- Class org.gcube.contentmanagement.graphtools.plotting.graphs.ScatterGraphNumeric extends GenericStandaloneGraph implements Serializable
  
  serialVersionUID:
  
  1L
- Class org.gcube.contentmanagement.graphtools.plotting.graphs.SpectrumPlot2 extends JPanel implements Serializable
  - Serialized Fields
    - spectrogram
```
BufferedImage spectrogram
```
    - scaledSpectrogram
```
Image scaledSpectrogram
```
    - zoom
```
float zoom
```
    - vzoom
```
float vzoom
```
    - offsetFactor
```
double offsetFactor
```
    - data
```
double[][] data
```
    - width
```
int width
```
    - height
```
int height
```
    - cmap
```
ColorMap cmap
```
    - minVal
```
double minVal
```
    - maxVal
```
double maxVal
```
- Class org.gcube.contentmanagement.graphtools.plotting.graphs.TimeSeriesGraph extends GenericStandaloneGraph implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - timeseriesformat
```
String timeseriesformat
```
- Class org.gcube.contentmanagement.graphtools.plotting.graphs.TransectLineGraph extends GenericStandaloneGraph implements Serializable
  
  serialVersionUID:
  
  1L
Package org.gcube.contentmanagement.lexicalmatcher.analysis.guesser.treeStructure.graph
- Class org.gcube.contentmanagement.lexicalmatcher.analysis.guesser.treeStructure.graph.CustomListenableDirectedWeightedGraph extends org.jgrapht.graph.ListenableDirectedWeightedGraph<V,E> implements Serializable
- Class org.gcube.contentmanagement.lexicalmatcher.analysis.guesser.treeStructure.graph.CustomWeightedEdge extends org.jgrapht.graph.DefaultWeightedEdge implements Serializable
  - Serialized Fields
    - weight
```
double weight
```
    - o1
```
Object o1
```
    - o2
```
Object o2
```
- Class org.gcube.contentmanagement.lexicalmatcher.analysis.guesser.treeStructure.graph.GraphDisplayer extends JApplet implements Serializable
  - Serialized Fields
    - m_jgAdapter
```
org.jgrapht.ext.JGraphModelAdapter<V,E> m_jgAdapter
```
    - newxposition
```
int newxposition
```
    - newyposition
```
int newyposition
```
    - g
```
CustomListenableDirectedWeightedGraph<V,E> g
```
    - nodesCounter
```
int nodesCounter
```
    - VertexNames
```
ArrayList<E> VertexNames
```
    - Edges
```
HashMap<K,V> Edges
```
- Class org.gcube.contentmanagement.lexicalmatcher.analysis.guesser.treeStructure.graph.GraphFramer extends Frame implements Serializable
  - Serialized Fields
    - graphDisplayer
```
GraphDisplayer graphDisplayer
```
- Class org.gcube.contentmanagement.lexicalmatcher.analysis.guesser.treeStructure.graph.GraphGeneratorApplet extends JApplet implements Serializable
  - Serialized Fields
    - m_jgAdapter
```
org.jgrapht.ext.JGraphModelAdapter<V,E> m_jgAdapter
```
- Class org.gcube.contentmanagement.lexicalmatcher.analysis.guesser.treeStructure.graph.RelationEdge extends org.jgrapht.graph.DefaultWeightedEdge implements Serializable
  - Serialized Fields
    - relationName
```
String relationName
```
    - indexFrom
```
long indexFrom
```
    - indexTo
```
long indexTo
```
    - weight
```
BigInteger weight
```
    - categoryFrom
```
String categoryFrom
```
    - categoryTo
```
String categoryTo
```
Package org.gcube.dataanalysis.ecoengine.clustering
- Class org.gcube.dataanalysis.ecoengine.clustering.XMeans extends weka.clusterers.RandomizableClusterer implements Serializable
  
  serialVersionUID:
  
  -7941793078404132616L
  - Serialized Fields
    - m_Instances
```
weka.core.Instances m_Instances
```
      training instances.
    - m_Model
```
weka.core.Instances m_Model
```
      model information, should increase readability.
    - m_ReplaceMissingFilter
```
weka.filters.unsupervised.attribute.ReplaceMissingValues m_ReplaceMissingFilter
```
      replace missing values in training instances.
    - m_BinValue
```
double m_BinValue
```
      Distance value between true and false of binary attributes and "same" and "different" of nominal attributes (default = 1.0).
    - m_Bic
```
double m_Bic
```
      BIC-Score of the current model.
    - m_Mle
```
double[] m_Mle
```
      Distortion.
    - m_MaxIterations
```
int m_MaxIterations
```
      maximum overall iterations.
    - m_MaxKMeans
```
int m_MaxKMeans
```
      maximum iterations to perform Kmeans part if negative, iterations are not checked.
    - m_MaxKMeansForChildren
```
int m_MaxKMeansForChildren
```
      see above, but for kMeans of splitted clusters.
    - m_NumClusters
```
int m_NumClusters
```
      The actual number of clusters.
    - m_MinNumClusters
```
int m_MinNumClusters
```
      min number of clusters to generate.
    - m_MaxNumClusters
```
int m_MaxNumClusters
```
      max number of clusters to generate.
    - m_DistanceF
```
weka.core.DistanceFunction m_DistanceF
```
      the distance function used.
    - m_ClusterCenters
```
weka.core.Instances m_ClusterCenters
```
      cluster centers.
    - m_InputCenterFile
```
File m_InputCenterFile
```
      file name of the output file for the cluster centers.
    - m_DebugVectorsInput
```
Reader m_DebugVectorsInput
```
      input file for the random vectors --> USED FOR DEBUGGING.
    - m_DebugVectorsIndex
```
int m_DebugVectorsIndex
```
      the index for the current debug vector.
    - m_DebugVectors
```
weka.core.Instances m_DebugVectors
```
      all the debug vectors.
    - m_DebugVectorsFile
```
File m_DebugVectorsFile
```
      file name of the input file for the random vectors.
    - m_CenterInput
```
Reader m_CenterInput
```
      input file for the cluster centers.
    - m_OutputCenterFile
```
File m_OutputCenterFile
```
      file name of the output file for the cluster centers.
    - m_CenterOutput
```
PrintWriter m_CenterOutput
```
      output file for the cluster centers.
    - m_ClusterAssignments
```
int[] m_ClusterAssignments
```
      temporary variable holding cluster assignments while iterating.
    - m_CutOffFactor
```
double m_CutOffFactor
```
      cutoff factor - percentage of splits done in Improve-Structure part only relevant, if all children lost.
    - m_KDTree
```
weka.core.neighboursearch.KDTree m_KDTree
```
      KDTrees class if KDTrees are used.
    - m_UseKDTree
```
boolean m_UseKDTree
```
      whether to use the KDTree (the KDTree is only initialized to be configurable from the GUI).
    - m_IterationCount
```
int m_IterationCount
```
      counts iterations done in main loop.
    - m_KMeansStopped
```
int m_KMeansStopped
```
      counter to say how often kMeans was stopped by loop counter.
    - m_NumSplits
```
int m_NumSplits
```
      Number of splits prepared.
    - m_NumSplitsDone
```
int m_NumSplitsDone
```
      Number of splits accepted (including cutoff factor decisions).
    - m_NumSplitsStillDone
```
int m_NumSplitsStillDone
```
      Number of splits accepted just because of cutoff factor.
    - m_DebugLevel
```
int m_DebugLevel
```
      level of debug output, 0 is no output.
    - m_CurrDebugFlag
```
boolean m_CurrDebugFlag
```
      Flag: I'm debugging.
Package org.gcube.dataanalysis.ecoengine.configuration
- Class org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration extends LexicalEngineConfiguration implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - configPath
```
String configPath
```
    - persistencePath
```
String persistencePath
```
    - tableSpace
```
String tableSpace
```
    - taskID
```
String taskID
```
    - endpoints
```
List<E> endpoints
```
    - numberOfResources
```
Integer numberOfResources
```
    - model
```
String model
```
    - generator
```
String generator
```
    - gcubeScope
```
String gcubeScope
```
    - gcubeUserName
```
String gcubeUserName
```
    - gcubeToken
```
String gcubeToken
```
    - generalProperties
```
HashMap<K,V> generalProperties
```
Package org.gcube.dataanalysis.ecoengine.evaluation.bioclimate
- Class org.gcube.dataanalysis.ecoengine.evaluation.bioclimate.BioClimateGraph extends GenericStandaloneGraph implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - max
```
double max
```
    - min
```
double min
```
Package org.gcube.dataanalysis.ecoengine.models.cores.neuralnetworks
- Class org.gcube.dataanalysis.ecoengine.models.cores.neuralnetworks.Neural_Network extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - griglia
```
Neuron[][] griglia
```
    - soglia
```
double soglia
```
    - maxcycle
```
double maxcycle
```
    - acceptanceThr
```
double acceptanceThr
```
    - maxfactor
```
double maxfactor
```
    - minfactor
```
double minfactor
```
    - status
```
float status
```
    - en
```
double en
```
- Class org.gcube.dataanalysis.ecoengine.models.cores.neuralnetworks.Neuron extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - attivfun
```
int attivfun
```
    - W
```
float[] W
```
Package org.gcube.dataanalysis.ecoengine.models.cores.neuralnetworks.neurosolutions
- Class org.gcube.dataanalysis.ecoengine.models.cores.neuralnetworks.neurosolutions.NeuralNet extends Object implements Serializable
  - Serialized Fields
    - neurons
```
Neuron[] neurons
```
    - synapses
```
Synapse[] synapses
```
    - nolayers
```
int nolayers
```
    - layers
```
org.gcube.dataanalysis.ecoengine.models.cores.neuralnetworks.neurosolutions.NeuralNet.Layer[] layers
```
    - randomizer
```
Randomizer randomizer
```
    - topology
```
int[] topology
```
- Class org.gcube.dataanalysis.ecoengine.models.cores.neuralnetworks.neurosolutions.Neuron extends Object implements Serializable
  - Serialized Fields
    - id
```
int id
```
    - threshold
```
double threshold
```
    - prevthreshold
```
double prevthreshold
```
    - layer
```
int layer
```
    - output
```
double output
```
    - axonfamily
```
char axonfamily
```
    - momentumrate
```
double momentumrate
```
    - axonfuncflatness
```
double axonfuncflatness
```
    - learningratecoefficient
```
double learningratecoefficient
```
    - neuronsout
```
Neuron[] neuronsout
```
    - neuronsin
```
Neuron[] neuronsin
```
    - synapsesout
```
Synapse[] synapsesout
```
    - synapsesin
```
Synapse[] synapsesin
```
    - error
```
double error
```
    - cumulthresholddiff
```
double cumulthresholddiff
```
- Class org.gcube.dataanalysis.ecoengine.models.cores.neuralnetworks.neurosolutions.Randomizer extends Object implements Serializable
  - Serialized Fields
    - random
```
Random random
```
- Class org.gcube.dataanalysis.ecoengine.models.cores.neuralnetworks.neurosolutions.Synapse extends Object implements Serializable
  - Serialized Fields
    - weight
```
double weight
```
    - prevweight
```
double prevweight
```
    - cumulweightdiff
```
double cumulweightdiff
```
    - sourceunit
```
Neuron sourceunit
```
    - targetunit
```
Neuron targetunit
```
Package org.gcube.dataanalysis.ecoengine.utils
- Class org.gcube.dataanalysis.ecoengine.utils.AliasToEntityOrderedMapResultTransformer extends org.hibernate.transform.BasicTransformerAdapter implements Serializable
  - Serialization Methods
    - readResolve
```
private Object readResolve()
```
      Serialization hook for ensuring singleton uniqueing.
- Class org.gcube.dataanalysis.ecoengine.utils.Tuple extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - elements
```
ArrayList<E> elements
```
Package org.gcube.portlets.user.timeseries.charts.support.assertions
- Class org.gcube.portlets.user.timeseries.charts.support.assertions.Assertion extends Object implements Serializable
  
  serialVersionUID:
  
  -2007903339251667541L
Package org.gcube.portlets.user.timeseries.charts.support.exceptions
- Class org.gcube.portlets.user.timeseries.charts.support.exceptions.InvalidParameterException extends Exception implements Serializable
  
  serialVersionUID:
  
  -9108485633158199338L
Package org.gcube.portlets.user.timeseries.charts.support.tablemodel
- Class org.gcube.portlets.user.timeseries.charts.support.tablemodel.FieldDescr extends Object implements Serializable
  
  serialVersionUID:
  
  532149221570962514L
  - Serialized Fields
    - alias
```
String alias
```
    - rawname
```
String rawname
```
- Class org.gcube.portlets.user.timeseries.charts.support.tablemodel.TableDescr extends Object implements Serializable
  
  serialVersionUID:
  
  -4850971456321479627L
  - Serialized Fields
    - name
```
String name
```
    - alias
```
String alias
```
    - fields
```
List<E> fields
```
Package org.gcube.portlets.user.timeseries.charts.support.types
- Class org.gcube.portlets.user.timeseries.charts.support.types.GraphData extends Object implements Serializable
  
  serialVersionUID:
  
  930654337632116093L
  - Serialized Fields
    - data
```
List<E> data
```
    - minY
```
Number minY
```
    - maxY
```
Number maxY
```
- Class org.gcube.portlets.user.timeseries.charts.support.types.GraphGroups extends Object implements Serializable
  
  serialVersionUID:
  
  -466243452417462863L
  - Serialized Fields
    - graphs
```
Map<K,V> graphs
```
- Class org.gcube.portlets.user.timeseries.charts.support.types.Point extends Object implements Serializable
  
  serialVersionUID:
  
  6164075295272357264L
  - Serialized Fields
    - label
```
String label
```
    - value
```
Number value
```
    - entries
```
List<E> entries
```
- Class org.gcube.portlets.user.timeseries.charts.support.types.ValueEntry extends Object implements Serializable
  
  serialVersionUID:
  
  -6765421417425929840L
  - Serialized Fields
    - label
```
String label
```
    - value
```
Number value
```

Serialized Form

Package org.gcube.contentmanagement.graphtools.abstracts

Class org.gcube.contentmanagement.graphtools.abstracts.GenericStandaloneGraph extends org.jfree.ui.ApplicationFrame implements Serializable

Serialized Fields

big

Package org.gcube.contentmanagement.graphtools.plotting.demo

Class org.gcube.contentmanagement.graphtools.plotting.demo.PieChartDemo1 extends org.jfree.ui.ApplicationFrame implements Serializable

Class org.gcube.contentmanagement.graphtools.plotting.demo.SpiderWebDemo1 extends org.jfree.ui.ApplicationFrame implements Serializable

Class org.gcube.contentmanagement.graphtools.plotting.demo.SpiderWebPlot extends org.jfree.chart.plot.Plot implements Serializable

Serialization Methods

readObject

writeObject

Serialized Fields

headPercent

interiorGap

axisLabelGap

dataset

maxValue

dataExtractOrder

startAngle

direction

seriesPaintList

seriesOutlinePaintList

seriesOutlineStrokeList

labelFont

labelGenerator

webFilled

toolTipGenerator

urlGenerator

Class org.gcube.contentmanagement.graphtools.plotting.demo.TimeSeriesChartDemo1 extends org.jfree.ui.ApplicationFrame implements Serializable

Package org.gcube.contentmanagement.graphtools.plotting.graphs

Class org.gcube.contentmanagement.graphtools.plotting.graphs.GaussianDistributionGraph extends GenericStandaloneGraph implements Serializable

Serialized Fields

mean

variance

Class org.gcube.contentmanagement.graphtools.plotting.graphs.HistogramGraph extends GenericStandaloneGraph implements Serializable

Class org.gcube.contentmanagement.graphtools.plotting.graphs.LineGraph extends GenericStandaloneGraph implements Serializable

Class org.gcube.contentmanagement.graphtools.plotting.graphs.NumericSeriesGraph extends GenericStandaloneGraph implements Serializable

Class org.gcube.contentmanagement.graphtools.plotting.graphs.PieGraph extends GenericStandaloneGraph implements Serializable

Class org.gcube.contentmanagement.graphtools.plotting.graphs.RadarGraph extends GenericStandaloneGraph implements Serializable

Class org.gcube.contentmanagement.graphtools.plotting.graphs.ScatterGraphGeneric extends GenericStandaloneGraph implements Serializable

Class org.gcube.contentmanagement.graphtools.plotting.graphs.ScatterGraphNumeric extends GenericStandaloneGraph implements Serializable

Class org.gcube.contentmanagement.graphtools.plotting.graphs.SpectrumPlot2 extends JPanel implements Serializable

Serialized Fields

spectrogram

scaledSpectrogram

zoom

vzoom

offsetFactor

data

width

height

cmap

minVal

maxVal

Class org.gcube.contentmanagement.graphtools.plotting.graphs.TimeSeriesGraph extends GenericStandaloneGraph implements Serializable

Serialized Fields

timeseriesformat

Class org.gcube.contentmanagement.graphtools.plotting.graphs.TransectLineGraph extends GenericStandaloneGraph implements Serializable

Package org.gcube.contentmanagement.lexicalmatcher.analysis.guesser.treeStructure.graph

Class org.gcube.contentmanagement.lexicalmatcher.analysis.guesser.treeStructure.graph.CustomListenableDirectedWeightedGraph extends org.jgrapht.graph.ListenableDirectedWeightedGraph<V,E> implements Serializable

Class org.gcube.contentmanagement.lexicalmatcher.analysis.guesser.treeStructure.graph.CustomWeightedEdge extends org.jgrapht.graph.DefaultWeightedEdge implements Serializable

Serialized Fields

weight

o1

o2

Class org.gcube.contentmanagement.lexicalmatcher.analysis.guesser.treeStructure.graph.GraphDisplayer extends JApplet implements Serializable

Serialized Fields

m_jgAdapter

newxposition

newyposition

g

nodesCounter

VertexNames

Edges

Class org.gcube.contentmanagement.lexicalmatcher.analysis.guesser.treeStructure.graph.GraphFramer extends Frame implements Serializable

Serialized Fields

graphDisplayer

Class org.gcube.contentmanagement.lexicalmatcher.analysis.guesser.treeStructure.graph.GraphGeneratorApplet extends JApplet implements Serializable

Serialized Fields