org.gcube.dataanalysis.ecoengine.evaluation.bioclimate

Class BioClimateAnalysis

java.lang.Object

org.gcube.dataanalysis.ecoengine.evaluation.bioclimate.BioClimateAnalysis

public class BioClimateAnalysis
extends Object

Field Summary

Fields

Modifier and Type	Field and Description
protected org.hibernate.SessionFactory	referencedbConnection
static String	salinityDefaultRange
static String	salinityMinFeature

Constructor Summary

Constructors

Constructor and Description
BioClimateAnalysis(String configPath, String persistencePath, String databaseURL, String databaseUserName, String databasePassword, boolean liveRender)

Method Summary

Methods

Modifier and Type	Method and Description
double	avgValue(String hcaf1, String field)
double	calcDiscrepancy(String configPath, String persistencePath, String firstTable, String secondTable, String probabilityColumnName, String csquareColumn, float comparisonThreshold)
int	calcHighProbabilityCells(String hspec, double probabilty)
double	calcOverDiscrepancy(String configPath, String persistencePath, String firstTable, String secondTable, String probabilityColumnName, String csquareColumn, float comparisonThreshold)
int	countIceLeakageCells(String hcaf1, String hcaf2)
int	countSeaCells(String hcaf1, String hcaf2, double threshold)
void	geographicEvolutionAnalysis(String[] hcafTable, String[] hcafTableNames) Generates a geographic trend for each hspec feature: ice con, salinity, sst in each fao area
HashMap<String,Image>	getProducedImages()
float	getStatus()
void	globalEvolutionAnalysis(String[] hcafTable, String[] hspecTables, String[] hcafTablesNames, String[] hspecTableNames, String probabilityColumn, String csquareColumn, float threshold) Generates a chart for each hspec feature Generates a chart for hspec prob > thr and performs a discrepancy analysis on hspec
void	hcafEvolutionAnalysis(String[] hcafTable, String[] hcafTableNames)
void	hspecEvolutionAnalysis(String[] hspecTables, String[] hspecTableNames, String probabilityColumn, String csquareColumn, float threshold)
static void	main(String[] args)
void	produceCharts(HashMap<String,HashMap<String,double[]>> GeoMap, String[] tablesNames)
void	produceGraphs2D()
void	speciesEvolutionAnalysis(String[] hspenTables, String[] hspenTableNames, String parameterName, String condition) Generates a chart for hspens in time according to a certain interval in the parameter e.g.
void	speciesGeographicEvolutionAnalysis(String[] hspecTables, String[] hspecTablesNames, float threshold)
void	speciesGeographicEvolutionAnalysis2(String[] hspecTables, String[] hspecTablesNames, float threshold) Generates a chart for hspec probability > thr in each Fao Area and LME

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

salinityDefaultRange

public static String salinityDefaultRange

salinityMinFeature

public static String salinityMinFeature

referencedbConnection

protected org.hibernate.SessionFactory referencedbConnection

Constructor Detail

BioClimateAnalysis

public BioClimateAnalysis(String configPath,
                  String persistencePath,
                  String databaseURL,
                  String databaseUserName,
                  String databasePassword,
                  boolean liveRender)
                   throws Exception

Throws:

Exception

Method Detail

main

public static void main(String[] args)
                 throws Exception

Throws:

Exception

produceGraphs2D

public void produceGraphs2D()
                     throws Exception

Throws:

Exception

getProducedImages

public HashMap<String,Image> getProducedImages()

hcafEvolutionAnalysis

public void hcafEvolutionAnalysis(String[] hcafTable,
                         String[] hcafTableNames)
                           throws Exception

Throws:

Exception

hspecEvolutionAnalysis

public void hspecEvolutionAnalysis(String[] hspecTables,
                          String[] hspecTableNames,
                          String probabilityColumn,
                          String csquareColumn,
                          float threshold)
                            throws Exception

Throws:

Exception

produceCharts

public void produceCharts(HashMap<String,HashMap<String,double[]>> GeoMap,
                 String[] tablesNames)

speciesEvolutionAnalysis

public void speciesEvolutionAnalysis(String[] hspenTables,
                            String[] hspenTableNames,
                            String parameterName,
                            String condition)
                              throws Exception

Generates a chart for hspens in time according to a certain interval in the parameter e.g. : a chart for several salinity intervals

Parameters:

hspenTables -

hspenTableNames -

parameterName -

condition -

Throws:

Exception

speciesGeographicEvolutionAnalysis2

public void speciesGeographicEvolutionAnalysis2(String[] hspecTables,
                                       String[] hspecTablesNames,
                                       float threshold)
                                         throws Exception

Generates a chart for hspec probability > thr in each Fao Area and LME

Parameters:

hspecTables -

hspecTablesNames -

Throws:

Exception

speciesGeographicEvolutionAnalysis

public void speciesGeographicEvolutionAnalysis(String[] hspecTables,
                                      String[] hspecTablesNames,
                                      float threshold)
                                        throws Exception

Throws:

Exception

geographicEvolutionAnalysis

public void geographicEvolutionAnalysis(String[] hcafTable,
                               String[] hcafTableNames)
                                 throws Exception

Generates a geographic trend for each hspec feature: ice con, salinity, sst in each fao area

Parameters:

hcafTable -

hcafTableNames -

Throws:

Exception

globalEvolutionAnalysis

public void globalEvolutionAnalysis(String[] hcafTable,
                           String[] hspecTables,
                           String[] hcafTablesNames,
                           String[] hspecTableNames,
                           String probabilityColumn,
                           String csquareColumn,
                           float threshold)
                             throws Exception

Generates a chart for each hspec feature Generates a chart for hspec prob > thr and performs a discrepancy analysis on hspec

Parameters:

hcafTable -

hspecTables -

hcafTablesNames -

hspecTableNames -

probabilityColumn -

csquareColumn -

Throws:

Exception

calcHighProbabilityCells

public int calcHighProbabilityCells(String hspec,
                           double probabilty)
                             throws Exception

Throws:

Exception

avgValue

public double avgValue(String hcaf1,
              String field)
                throws Exception

Throws:

Exception

countIceLeakageCells

public int countIceLeakageCells(String hcaf1,
                       String hcaf2)
                         throws Exception

Throws:

Exception

countSeaCells

public int countSeaCells(String hcaf1,
                String hcaf2,
                double threshold)
                  throws Exception

Throws:

Exception

getStatus

public float getStatus()

calcOverDiscrepancy

public double calcOverDiscrepancy(String configPath,
                         String persistencePath,
                         String firstTable,
                         String secondTable,
                         String probabilityColumnName,
                         String csquareColumn,
                         float comparisonThreshold)
                           throws Exception

Throws:

Exception

calcDiscrepancy

public double calcDiscrepancy(String configPath,
                     String persistencePath,
                     String firstTable,
                     String secondTable,
                     String probabilityColumnName,
                     String csquareColumn,
                     float comparisonThreshold)
                       throws Exception

Throws:

Exception