Uses of Class
org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration

Packages that use AlgorithmConfiguration

Package	Description
org.gcube.dataanalysis.ecoengine.clustering
org.gcube.dataanalysis.ecoengine.configuration
org.gcube.dataanalysis.ecoengine.interfaces
org.gcube.dataanalysis.ecoengine.modeling
org.gcube.dataanalysis.ecoengine.models
org.gcube.dataanalysis.ecoengine.models.cores.pca
org.gcube.dataanalysis.ecoengine.models.testing
org.gcube.dataanalysis.ecoengine.processing
org.gcube.dataanalysis.ecoengine.processing.factories
org.gcube.dataanalysis.ecoengine.signals
org.gcube.dataanalysis.ecoengine.spatialdistributions
org.gcube.dataanalysis.ecoengine.test
org.gcube.dataanalysis.ecoengine.test.checks
org.gcube.dataanalysis.ecoengine.test.experiments.latimeria
org.gcube.dataanalysis.ecoengine.test.regression
org.gcube.dataanalysis.ecoengine.test.signalprocessing
org.gcube.dataanalysis.ecoengine.test.tablescomparisons
org.gcube.dataanalysis.ecoengine.transducers
org.gcube.dataanalysis.ecoengine.user
org.gcube.dataanalysis.ecoengine.utils

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.clustering

Fields in org.gcube.dataanalysis.ecoengine.clustering declared as AlgorithmConfiguration

Modifier and Type	Field and Description
protected AlgorithmConfiguration	DBScan.config

Methods in org.gcube.dataanalysis.ecoengine.clustering with parameters of type AlgorithmConfiguration

Modifier and Type	Method and Description
void	KMeans.setConfiguration(AlgorithmConfiguration config)
void	XMeansWrapper.setConfiguration(AlgorithmConfiguration config)
void	DBScan.setConfiguration(AlgorithmConfiguration config)
void	LOF.setConfiguration(AlgorithmConfiguration config)

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.configuration

Methods in org.gcube.dataanalysis.ecoengine.configuration with parameters of type AlgorithmConfiguration

Modifier and Type	Method and Description
static org.hibernate.SessionFactory	AlgorithmConfiguration.getConnectionFromConfig(AlgorithmConfiguration Input)

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.interfaces

Fields in org.gcube.dataanalysis.ecoengine.interfaces declared as AlgorithmConfiguration

Modifier and Type	Field and Description
protected AlgorithmConfiguration	StandardLocalExternalAlgorithm.config
protected AlgorithmConfiguration	DataAnalysis.config

Methods in org.gcube.dataanalysis.ecoengine.interfaces with parameters of type AlgorithmConfiguration

Modifier and Type	Method and Description
Map<String,Transducerer>	DynamicTransducer.getTransducers(AlgorithmConfiguration config)
void	SpatialProbabilityDistributionGeneric.init(AlgorithmConfiguration config)
void	Model.init(AlgorithmConfiguration Input, Model previousModel)
void	SpatialProbabilityDistributionTable.init(AlgorithmConfiguration config, org.hibernate.SessionFactory dbHibConnection)
abstract void	ActorNode.initSingleNode(AlgorithmConfiguration config)
abstract void	SpatialProbabilityDistributionNode.initSingleNode(AlgorithmConfiguration config)
void	Model.postprocess(AlgorithmConfiguration Input, Model previousModel)
void	StandardLocalExternalAlgorithm.setConfiguration(AlgorithmConfiguration config)
void	ComputationalAgent.setConfiguration(AlgorithmConfiguration config)
void	DataAnalysis.setConfiguration(AlgorithmConfiguration config)
abstract void	ActorNode.setup(AlgorithmConfiguration config)
abstract void	SpatialProbabilityDistributionNode.setup(AlgorithmConfiguration config)
void	Model.train(AlgorithmConfiguration Input, Model previousModel)

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.modeling

Fields in org.gcube.dataanalysis.ecoengine.modeling declared as AlgorithmConfiguration

Modifier and Type	Field and Description
protected AlgorithmConfiguration	SimpleModeler.Input

Methods in org.gcube.dataanalysis.ecoengine.modeling with parameters of type AlgorithmConfiguration

Modifier and Type	Method and Description
void	SimpleModeler.setConfiguration(AlgorithmConfiguration config)

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.models

Methods in org.gcube.dataanalysis.ecoengine.models with parameters of type AlgorithmConfiguration

Modifier and Type	Method and Description
void	ModelHSPEN.init(AlgorithmConfiguration setup, Model previousModel)
void	ModelAquamapsNNNS.init(AlgorithmConfiguration Input, Model previousModel)
void	ModelAquamapsNN.init(AlgorithmConfiguration Input, Model previousModel)
void	FeedForwardNN.init(AlgorithmConfiguration config, Model previousModel)
void	ModelHSPEN.postprocess(AlgorithmConfiguration Input, Model previousModel)
void	ModelAquamapsNNNS.postprocess(AlgorithmConfiguration Input, Model previousModel)
void	ModelAquamapsNN.postprocess(AlgorithmConfiguration Input, Model previousModel)
void	ModelHSPEN.train(AlgorithmConfiguration Input, Model previousModel)
void	ModelAquamapsNNNS.train(AlgorithmConfiguration Input, Model previousModel)
void	ModelAquamapsNN.train(AlgorithmConfiguration Input, Model previousModel)
void	FeedForwardNN.train(AlgorithmConfiguration Input, Model previousModel)

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.models.cores.pca

Methods in org.gcube.dataanalysis.ecoengine.models.cores.pca with parameters of type AlgorithmConfiguration

Modifier and Type	Method and Description
void	PrincipalComponentAnalysis.init(AlgorithmConfiguration config)

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.models.testing

Methods in org.gcube.dataanalysis.ecoengine.models.testing with parameters of type AlgorithmConfiguration

Modifier and Type	Method and Description
void	FeedForwardNNFile.init(AlgorithmConfiguration config, Model previousModel)
void	FeedForwardNNFile.train(AlgorithmConfiguration Input, Model previousModel)

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.processing

Fields in org.gcube.dataanalysis.ecoengine.processing declared as AlgorithmConfiguration

Modifier and Type	Field and Description
protected AlgorithmConfiguration	LocalSimpleSplitGenerator.config

Methods in org.gcube.dataanalysis.ecoengine.processing with parameters of type AlgorithmConfiguration

Modifier and Type	Method and Description
void	RainyCloudGenerator.setConfiguration(AlgorithmConfiguration config)
void	LocalSplitGenerator.setConfiguration(AlgorithmConfiguration config)
void	LocalSimpleSplitGenerator.setConfiguration(AlgorithmConfiguration config)

Constructors in org.gcube.dataanalysis.ecoengine.processing with parameters of type AlgorithmConfiguration

Constructor and Description
LocalSplitGenerator(AlgorithmConfiguration config)
RainyCloudGenerator(AlgorithmConfiguration config)

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.processing.factories

Methods in org.gcube.dataanalysis.ecoengine.processing.factories with parameters of type AlgorithmConfiguration

Modifier and Type	Method and Description
static List<String>	DynamicTransducerersFactory.getAllDynamicTransducerers(AlgorithmConfiguration config)
static HashMap<String,List<String>>	ProcessorsFactory.getAllFeatures(AlgorithmConfiguration config)
static HashMap<String,List<String>>	ProcessorsFactory.getAllFeaturesUser(AlgorithmConfiguration config)
static Map<String,Transducerer>	DynamicTransducerersFactory.getAllSubTransducerers(AlgorithmConfiguration config)
static List<String>	TransducerersFactory.getAllTransducerers(AlgorithmConfiguration config)
static Clusterer	ClusterersFactory.getClusterer(AlgorithmConfiguration config)
static List<ComputationalAgent>	ClusterersFactory.getClusterers(AlgorithmConfiguration config)
static String	DynamicTransducerersFactory.getDescription(AlgorithmConfiguration config, String algorithmName)
static String	TransducerersFactory.getDescription(AlgorithmConfiguration config, String algorithmName)
static Evaluator	EvaluatorsFactory.getEvaluator(AlgorithmConfiguration config)
static List<ComputationalAgent>	EvaluatorsFactory.getEvaluators(AlgorithmConfiguration config)
static Generator	GeneratorsFactory.getGenerator(AlgorithmConfiguration config)
static List<ComputationalAgent>	GeneratorsFactory.getGenerators(AlgorithmConfiguration config)
static Modeler	ModelersFactory.getModeler(AlgorithmConfiguration config)
static List<ComputationalAgent>	ModelersFactory.getModelers(AlgorithmConfiguration config)
static ComputationalAgent	ProcessorsFactory.getProcessor(AlgorithmConfiguration config, String file)
static ComputationalAgent	ProcessorsFactory.getProcessor(AlgorithmConfiguration config, String file, String explicitAlgorithm)
static Transducerer	DynamicTransducerersFactory.getTransducerer(AlgorithmConfiguration config)
static Transducerer	TransducerersFactory.getTransducerer(AlgorithmConfiguration config)
static List<ComputationalAgent>	TransducerersFactory.getTransducerers(AlgorithmConfiguration config)
static List<String>	DynamicTransducerersFactory.getTransducerersNames(AlgorithmConfiguration config)
static StatisticalType	TransducerersFactory.getTransducerOutput(AlgorithmConfiguration config, String algorithmName)
static List<StatisticalType>	TransducerersFactory.getTransducerParameters(AlgorithmConfiguration config, String algorithmName)

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.signals

Methods in org.gcube.dataanalysis.ecoengine.signals with parameters of type AlgorithmConfiguration

Modifier and Type	Method and Description
static TimeSeries	TimeSeries.buildFromSignal(List<Tuple<String>> lines, AlgorithmConfiguration config)
static double[]	SignalProcessing.downSample(double[] signal, int numElements, AlgorithmConfiguration config)
static Date[]	SignalProcessing.fillTimeLine(double[] timemilliseconds, double samplingRate, AlgorithmConfiguration config)
static double[]	SignalProcessing.fillTimeSeries(double[] values, double[] timeseconds, double samplingRate, AlgorithmConfiguration config)

Constructors in org.gcube.dataanalysis.ecoengine.signals with parameters of type AlgorithmConfiguration

Constructor and Description
TimeSeries(double[] values, Date[] time, String[] timeLabels, AlgorithmConfiguration config)
TimeSeries(int timeLength, AlgorithmConfiguration config)

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.spatialdistributions

Fields in org.gcube.dataanalysis.ecoengine.spatialdistributions declared as AlgorithmConfiguration

Modifier and Type	Field and Description
protected AlgorithmConfiguration	BayesianDistribution.config

Methods in org.gcube.dataanalysis.ecoengine.spatialdistributions with parameters of type AlgorithmConfiguration

Modifier and Type	Method and Description
void	TestAlgorithm.init(AlgorithmConfiguration config)
void	BayesianDistribution.init(AlgorithmConfiguration config)
void	DummyAlgorithm.init(AlgorithmConfiguration config)
void	AquamapsNN.init(AlgorithmConfiguration config, org.hibernate.SessionFactory dbHibConnection)
void	AquamapsNNSuitable.init(AlgorithmConfiguration config, org.hibernate.SessionFactory dbHibConnection)
void	AquamapsNative2050.init(AlgorithmConfiguration config, org.hibernate.SessionFactory dbHibConnection)
void	AquamapsNNNS.init(AlgorithmConfiguration config, org.hibernate.SessionFactory dbHibConnection)
void	AquamapsSuitable.init(AlgorithmConfiguration config, org.hibernate.SessionFactory dbHibConnection)
void	AquamapsSuitable2050.init(AlgorithmConfiguration config, org.hibernate.SessionFactory dbHibConnection)

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.test

Methods in org.gcube.dataanalysis.ecoengine.test that return AlgorithmConfiguration

Modifier and Type	Method and Description
static AlgorithmConfiguration	TestSimpleSignal.earthquakesSignalConfig()
static AlgorithmConfiguration	TestSimpleSignal.hugeSignalConfig()
static AlgorithmConfiguration	TestSimpleSignal.largeCustomSignalConfig()
static AlgorithmConfiguration	TestSimpleSignal.NAFOSignalConfig()
static AlgorithmConfiguration	TestSimpleSignal.occurrencePointsSignalConfig()
static AlgorithmConfiguration	TestSimpleSignal.periodicSignalConfig()
static AlgorithmConfiguration	TestSimpleSignal.russianSignalConfig()
static AlgorithmConfiguration	TestSimpleSignal.sawSignalConfig()
static AlgorithmConfiguration	TestSimpleSignal.simpleSignalConfig()
static AlgorithmConfiguration	TestSimpleSignal.temperatureSignalConfig()

Constructors in org.gcube.dataanalysis.ecoengine.test with parameters of type AlgorithmConfiguration

Constructor and Description
TablesComparison(AlgorithmConfiguration config)
TablesComparisonLatimeria(AlgorithmConfiguration config)

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.test.checks

Constructors in org.gcube.dataanalysis.ecoengine.test.checks with parameters of type AlgorithmConfiguration

Constructor and Description
TestEvaluation.ThreadCalculator(ComputationalAgent dg, AlgorithmConfiguration config)
TestsHSPENTraining.ThreadCalculator(ComputationalAgent dg, AlgorithmConfiguration config)

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.test.experiments.latimeria

Methods in org.gcube.dataanalysis.ecoengine.test.experiments.latimeria that return AlgorithmConfiguration

Modifier and Type	Method and Description
static AlgorithmConfiguration	TablesComparisonForLatimeria.configDiscrepancyAnalysis(String table1, String table2)
static AlgorithmConfiguration	TablesComparisonForLatimeria.getConfig()

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.test.regression

Methods in org.gcube.dataanalysis.ecoengine.test.regression that return AlgorithmConfiguration

Modifier and Type	Method and Description
static AlgorithmConfiguration	Regressor.getConfig()

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.test.signalprocessing

Methods in org.gcube.dataanalysis.ecoengine.test.signalprocessing that return AlgorithmConfiguration

Modifier and Type	Method and Description
static AlgorithmConfiguration	IOTCAnalyse.configAlgorithm()
static AlgorithmConfiguration	TestSimpleSignal.earthquakesSignalConfig()
static AlgorithmConfiguration	TestSimpleSignal.hugeSignalConfig()
static AlgorithmConfiguration	TestIOTCSignals.IOTCLatitudeConfig()
static AlgorithmConfiguration	TestIOTCSignals.IOTClongitudeConfig()
static AlgorithmConfiguration	TestIOTCSignals.IOTCSignalConfig()
static AlgorithmConfiguration	TestSimpleSignal.IOTCSSignalConfig()
static AlgorithmConfiguration	TestSimpleSignal.largeCustomSignalConfig()
static AlgorithmConfiguration	TestSimpleSignal.NAFOSignalConfig()
static AlgorithmConfiguration	TestSimpleSignal.occurrencePointsSignalConfig()
static AlgorithmConfiguration	TestSimpleSignal.periodicSignalConfig()
static AlgorithmConfiguration	TestSimpleSignal.russianSignalConfig()
static AlgorithmConfiguration	TestSimpleSignal.sawSignalConfig()
static AlgorithmConfiguration	TestSimpleSignal.simpleSignalConfig()
static AlgorithmConfiguration	TestSimpleSignal.temperatureBariSignalConfig()
static AlgorithmConfiguration	TestSimpleSignal.temperatureShortSignalConfig()
static AlgorithmConfiguration	TestSimpleSignal.temperatureSignalConfig()

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.test.tablescomparisons

Constructors in org.gcube.dataanalysis.ecoengine.test.tablescomparisons with parameters of type AlgorithmConfiguration

Constructor and Description
TablesComparison(AlgorithmConfiguration config)

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.transducers

Fields in org.gcube.dataanalysis.ecoengine.transducers declared as AlgorithmConfiguration

Modifier and Type	Field and Description
protected AlgorithmConfiguration	InterpolationTransducer.config
protected AlgorithmConfiguration	QueryExecutor.config
protected AlgorithmConfiguration	BioClimateHSPECTransducer.config
protected AlgorithmConfiguration	OccurrencePointsMerger.config

Methods in org.gcube.dataanalysis.ecoengine.transducers with parameters of type AlgorithmConfiguration

Modifier and Type	Method and Description
void	TestTrans.setConfiguration(AlgorithmConfiguration config)
void	InterpolationTransducer.setConfiguration(AlgorithmConfiguration config)
void	QueryExecutor.setConfiguration(AlgorithmConfiguration config)
void	BioClimateHSPECTransducer.setConfiguration(AlgorithmConfiguration config)
void	OccurrencePointsMerger.setConfiguration(AlgorithmConfiguration config)

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.user

Methods in org.gcube.dataanalysis.ecoengine.user that return AlgorithmConfiguration

Modifier and Type	Method and Description
static AlgorithmConfiguration	EvaluatorT.getDiscrepancyConfiguration(String operationName, String firstTable, String secondTable, String firstTableCsquareColumn, String secondTableCsquareColumn, String firstTableProbabilityColumn, String secondTableProbabilityColumn, String comparisonThreshold, String configPath)
static AlgorithmConfiguration	EvaluatorT.getEvaluationConfiguration(String configPath, String operationName, String positiveCasesTable, String negativeCasesTable, String positiveCasesTableKeyColumn, String negativeCasesKeyColumn, String finalDistributionTable, String finalDistributionTableKeyColumn, String finalDistributionTableProbabilityColumn, String positiveThreshold, String negativeThreshold)
static AlgorithmConfiguration	GeneratorT.getGenerationConfig(int numberOfResources, String algorithmName, String envelopeTable, String preprocessedTable, String speciesName, String userName, String csquareTable, String finalDistributionTable, String configPath)
static AlgorithmConfiguration	ModelerT.getTrainingConfig(String modelName, String absenceTable, String presenceTable, String speciesCode, String userName, String layersNeurons, String configPath)
static AlgorithmConfiguration	ModelerT.getTrainingConfigHSPEN(String modelName, String outputTable, String occurrenceCells, String hspenOrigin, String hcaf, String configPath)

Methods in org.gcube.dataanalysis.ecoengine.user with parameters of type AlgorithmConfiguration

Modifier and Type	Method and Description
static void	EvaluatorT.evaluate(AlgorithmConfiguration config)
static void	GeneratorT.generate(AlgorithmConfiguration config)
static void	ModelerT.train(AlgorithmConfiguration config)

Constructors in org.gcube.dataanalysis.ecoengine.user with parameters of type AlgorithmConfiguration

Constructor and Description
EvaluatorT(ComputationalAgent dg, AlgorithmConfiguration config)
ModelerT(ComputationalAgent dg, AlgorithmConfiguration config)

Uses of AlgorithmConfiguration in org.gcube.dataanalysis.ecoengine.utils

Fields in org.gcube.dataanalysis.ecoengine.utils declared as AlgorithmConfiguration

Modifier and Type	Field and Description
protected AlgorithmConfiguration	IOHelper.config

Methods in org.gcube.dataanalysis.ecoengine.utils that return AlgorithmConfiguration

Modifier and Type	Method and Description
static AlgorithmConfiguration	PresetConfigGenerator.configAbsenceTable(boolean random, String absenceTable, String hspecTable, int numberOfPoints, String speciesCode)
static AlgorithmConfiguration	PresetConfigGenerator.configAquamapsNative(String aquamapsNativeTable, String envelopeTable)
static AlgorithmConfiguration	PresetConfigGenerator.configAquamapsNNNative(String tableName, String username, String envelopeTable, String speciesID, String nnname)
static AlgorithmConfiguration	PresetConfigGenerator.configAquamapsNNSuitable(String tableName, String username, String envelopeTable, String speciesID, String nnname)
static AlgorithmConfiguration	PresetConfigGenerator.configAquamapsSuitable(String aquamapsSuitableTable, String envelopeTable)
static AlgorithmConfiguration	PresetConfigGenerator.configDiscrepancyAnalysis(String table1, String table2)
static AlgorithmConfiguration	PresetConfigGenerator.configHCAFfilter(String table, float x1, float y1, float x2, float y2)
static AlgorithmConfiguration	PresetConfigGenerator.configHRSAnalysis(String projectiontable, String absenceTable, String presenceTable)
static AlgorithmConfiguration	PresetConfigGenerator.configHSPENfilter(String table, String speciesList)
static AlgorithmConfiguration	PresetConfigGenerator.configNativeNeuralNetworkTraining(String presenceTable, String absenceTable, String username, String speciesID, String neuronsAndLayers, String nnname)
static AlgorithmConfiguration	PresetConfigGenerator.configPresenceTable(String presenceTable, int numberOfPoints, String speciesCode)
static AlgorithmConfiguration	PresetConfigGenerator.configQualityAnalysis(String presenceTable, String absenceTable, String table)
static AlgorithmConfiguration	PresetConfigGenerator.configSuitableNeuralNetworkTraining(String presenceTable, String absenceTable, String username, String speciesID, String neuronsAndLayers, String nnname)
static AlgorithmConfiguration	Transformations.restoreConfig(String configFile)

Methods in org.gcube.dataanalysis.ecoengine.utils with parameters of type AlgorithmConfiguration

Modifier and Type	Method and Description
static void	Transformations.dumpConfig(String pathToFile, AlgorithmConfiguration config)
void	TrainingSetsGenerator.generate(AlgorithmConfiguration config)
static String	IOHelper.getInputParameter(AlgorithmConfiguration config, String paramName)
void	TrainingSetsGenerator.init(AlgorithmConfiguration config)
static org.hibernate.SessionFactory	DatabaseUtils.initDBSession(AlgorithmConfiguration config)

Constructors in org.gcube.dataanalysis.ecoengine.utils with parameters of type AlgorithmConfiguration

Constructor and Description
HspecDiscrepanciesCalculator(AlgorithmConfiguration config)
TablesDiscrepanciesCalculator(AlgorithmConfiguration config)