OccurrencePointsMerger (ecological-engine 1.8.6-SNAPSHOT API)

java.lang.Object
- org.gcube.dataanalysis.ecoengine.transducers.OccurrencePointsMerger

All Implemented Interfaces:

ComputationalAgent, Transducerer

Direct Known Subclasses:

OccurrencePointsDuplicatesDeleter, OccurrencePointsInSeaOnEarth, OccurrencePointsIntersector, OccurrencePointsSubtraction
```
public class OccurrencePointsMerger
extends Object
implements Transducerer
```

Nested Class Summary

Nested Classes
Modifier and Type Class and Description

protected class OccurrencePointsMerger.OccurrenceRecord

Nested Classes
Modifier and Type	Class and Description
`protected class`	`OccurrencePointsMerger.OccurrenceRecord`

Field Summary

Fields
Modifier and Type	Field and Description
`protected StringBuffer`	`columns`
`protected List<Object>`	`columnsNames`
`protected static String`	`confidence`
`protected float`	`confidenceValue`
`protected AlgorithmConfiguration`	`config`
`protected org.hibernate.SessionFactory`	`dbconnection`
`protected static String`	`eventDateColumn`
`protected String`	`eventDatFld`
`protected String`	`finalTableLabel`
`protected String`	`finalTableName`
`protected static String`	`finalTableNameF`
`protected static String`	`finalTableNameL`
`protected boolean`	`firstbest`
`protected static String`	`javaDateFormat`
`protected static String`	`lastModificationColumn`
`protected String`	`latFld`
`protected static String`	`latitudeColumn`
`List<Object>`	`leftRows`
`protected String`	`leftTableName`
`protected static String`	`leftTableNameF`
`protected String`	`lonFld`
`protected static String`	`longitudeColumn`
`protected String`	`modifDatFld`
`protected List<OccurrencePointsMerger.OccurrenceRecord>`	`objectstodelete`
`protected List<OccurrencePointsMerger.OccurrenceRecord>`	`objectstoinsert`
`protected static String`	`recordedByColumn`
`protected String`	`recordedByFld`
`protected List<OccurrencePointsMerger.OccurrenceRecord>`	`records_left`
`protected List<OccurrencePointsMerger.OccurrenceRecord>`	`records_right`
`List<Object>`	`rightRows`
`protected String`	`rightTableName`
`protected static String`	`rightTableNameF`
`protected static String`	`scientificNameColumn`
`protected String`	`scientificNameFld`
`protected static String`	`spatialTolerance`
`protected float`	`spatialToleranceValue`
`protected static String`	`sqlDateFormat`
`protected float`	`status`
`protected static String`	`tableNameF`

Constructor Summary

Constructors
Constructor and Description

OccurrencePointsMerger()

Constructors
Constructor and Description
`OccurrencePointsMerger()`

Method Summary

Methods
Modifier and Type	Method and Description
`void`	`compute()`
`void`	`computeRange()`
`static String`	`convert2conventionalFormat(Calendar date)`
`protected float`	`extProb(OccurrencePointsMerger.OccurrenceRecord right, OccurrencePointsMerger.OccurrenceRecord left)`
`void`	`extractColumnNames()`
`String`	`getDescription()`
`INFRASTRUCTURE`	`getInfrastructure()`
`List<StatisticalType>`	`getInputParameters()`
`int`	`getNumLeftObjects()`
`int`	`getNumRightObjects()`
`StatisticalType`	`getOutput()`
`String`	`getResourceLoad()`
`String`	`getResources()`
`float`	`getStatus()`
`void`	`init()`
`void`	`initDB(boolean buildTable)`
`protected void`	`insertBuffer(StringBuffer buffer)`
`static void`	`main(String[] args)`
`protected void`	`manageHighProbability(float probability, OccurrencePointsMerger.OccurrenceRecord leftOcc, OccurrencePointsMerger.OccurrenceRecord rightOcc)`
`protected void`	`manageLowProbability(float probability, OccurrencePointsMerger.OccurrenceRecord leftOcc, OccurrencePointsMerger.OccurrenceRecord rightOcc)`
`String`	`occurrenceRecord2String(OccurrencePointsMerger.OccurrenceRecord record)`
`protected void`	`persist()`
`void`	`postProcess()`
`protected void`	`prepareFinalTable()`
`protected float`	`probabilityDates(Calendar first, Calendar second)`
`protected float`	`probabilityStrings(String first, String second)`
`OccurrencePointsMerger.OccurrenceRecord`	`row2OccurrenceRecord(Object[] row)`
`void`	`setConfiguration(AlgorithmConfiguration config)`
`void`	`shutdown()`
`protected String`	`takeEssential(OccurrencePointsMerger.OccurrenceRecord record)`
`void`	`takeFullRanges()`
`void`	`takeRange(int offsetLeft, int numLeft, int offsetRight, int numRight)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

finalTableNameL

protected static String finalTableNameL

longitudeColumn

protected static String longitudeColumn

latitudeColumn
```
protected static String latitudeColumn
```

recordedByColumn

protected static String recordedByColumn

scientificNameColumn

protected static String scientificNameColumn

eventDateColumn

protected static String eventDateColumn

lastModificationColumn

protected static String lastModificationColumn

rightTableNameF

protected static String rightTableNameF

leftTableNameF
```
protected static String leftTableNameF
```

finalTableNameF

protected static String finalTableNameF

spatialTolerance

protected static String spatialTolerance

confidence
```
protected static String confidence
```

sqlDateFormat
```
protected static String sqlDateFormat
```

javaDateFormat
```
protected static String javaDateFormat
```

tableNameF
```
protected static String tableNameF
```

records_left

protected List<OccurrencePointsMerger.OccurrenceRecord> records_left

records_right

protected List<OccurrencePointsMerger.OccurrenceRecord> records_right

config

protected AlgorithmConfiguration config

lonFld
```
protected String lonFld
```

latFld
```
protected String latFld
```

recordedByFld
```
protected String recordedByFld
```

scientificNameFld
```
protected String scientificNameFld
```

eventDatFld
```
protected String eventDatFld
```

modifDatFld
```
protected String modifDatFld
```

leftTableName
```
protected String leftTableName
```

rightTableName
```
protected String rightTableName
```

finalTableName
```
protected String finalTableName
```

finalTableLabel
```
protected String finalTableLabel
```

spatialToleranceValue
```
protected float spatialToleranceValue
```

confidenceValue
```
protected float confidenceValue
```

columns
```
protected StringBuffer columns
```

objectstoinsert

protected List<OccurrencePointsMerger.OccurrenceRecord> objectstoinsert

objectstodelete

protected List<OccurrencePointsMerger.OccurrenceRecord> objectstodelete

columnsNames
```
protected List<Object> columnsNames
```

dbconnection

protected org.hibernate.SessionFactory dbconnection

status
```
protected float status
```

firstbest
```
protected boolean firstbest
```

leftRows
```
public List<Object> leftRows
```

rightRows
```
public List<Object> rightRows
```

Constructor Detail
- OccurrencePointsMerger
```
public OccurrencePointsMerger()
```

Method Detail

convert2conventionalFormat

public static String convert2conventionalFormat(Calendar date)

row2OccurrenceRecord

public OccurrencePointsMerger.OccurrenceRecord row2OccurrenceRecord(Object[] row)

takeEssential

protected String takeEssential(OccurrencePointsMerger.OccurrenceRecord record)

occurrenceRecord2String

public String occurrenceRecord2String(OccurrencePointsMerger.OccurrenceRecord record)

getInputParameters
```
public List<StatisticalType> getInputParameters()
```
Specified by:

getInputParameters in interface ComputationalAgent

getResources
```
public String getResources()
```
Specified by:

getResources in interface ComputationalAgent

getResourceLoad
```
public String getResourceLoad()
```
Specified by:

getResourceLoad in interface ComputationalAgent

getStatus
```
public float getStatus()
```
Specified by:

getStatus in interface ComputationalAgent

getInfrastructure
```
public INFRASTRUCTURE getInfrastructure()
```
Specified by:

getInfrastructure in interface ComputationalAgent

getOutput
```
public StatisticalType getOutput()
```
Specified by:

getOutput in interface ComputationalAgent

init
```
public void init()
          throws Exception
```
Specified by:

init in interface ComputationalAgent

Throws:

Exception

setConfiguration
```
public void setConfiguration(AlgorithmConfiguration config)
```
Specified by:

setConfiguration in interface ComputationalAgent

getDescription
```
public String getDescription()
```
Specified by:

getDescription in interface ComputationalAgent

probabilityStrings

protected float probabilityStrings(String first,
                       String second)

probabilityDates

protected float probabilityDates(Calendar first,
                     Calendar second)

extProb

protected float extProb(OccurrencePointsMerger.OccurrenceRecord right,
            OccurrencePointsMerger.OccurrenceRecord left)

manageHighProbability

protected void manageHighProbability(float probability,
                         OccurrencePointsMerger.OccurrenceRecord leftOcc,
                         OccurrencePointsMerger.OccurrenceRecord rightOcc)

manageLowProbability

protected void manageLowProbability(float probability,
                        OccurrencePointsMerger.OccurrenceRecord leftOcc,
                        OccurrencePointsMerger.OccurrenceRecord rightOcc)

persist

protected void persist()
                throws Exception

Throws:: Exception

insertBuffer

protected void insertBuffer(StringBuffer buffer)
                     throws Exception

Throws:: Exception

prepareFinalTable

protected void prepareFinalTable()
                          throws Exception

Throws:: Exception

extractColumnNames

public void extractColumnNames()
                        throws Exception

Throws:: Exception

initDB

public void initDB(boolean buildTable)
            throws Exception

Throws:: Exception

shutdown
```
public void shutdown()
```
Specified by:

shutdown in interface ComputationalAgent

getNumLeftObjects
```
public int getNumLeftObjects()
```

getNumRightObjects
```
public int getNumRightObjects()
```

takeFullRanges
```
public void takeFullRanges()
```

takeRange

public void takeRange(int offsetLeft,
             int numLeft,
             int offsetRight,
             int numRight)

computeRange

public void computeRange()
                  throws Exception

Throws:: Exception

compute
```
public void compute()
             throws Exception
```
Specified by:

compute in interface ComputationalAgent

Throws:

Exception

postProcess

public void postProcess()
                 throws Exception

Throws:: Exception

main

public static void main(String[] args)
                 throws Exception

Throws:: Exception

Class OccurrencePointsMerger

Nested Class Summary

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

finalTableNameL

longitudeColumn

latitudeColumn

recordedByColumn

scientificNameColumn

eventDateColumn

lastModificationColumn

rightTableNameF

leftTableNameF

finalTableNameF

spatialTolerance

confidence

sqlDateFormat

javaDateFormat

tableNameF

records_left

records_right

config

lonFld

latFld

recordedByFld

scientificNameFld

eventDatFld

modifDatFld

leftTableName

rightTableName

finalTableName

finalTableLabel

spatialToleranceValue

confidenceValue

columns

objectstoinsert

objectstodelete

columnsNames

dbconnection

status

firstbest

leftRows

rightRows

Constructor Detail

OccurrencePointsMerger

Method Detail

convert2conventionalFormat

row2OccurrenceRecord

takeEssential

occurrenceRecord2String

getInputParameters

getResources

getResourceLoad

getStatus

getInfrastructure

getOutput

init

setConfiguration

getDescription

probabilityStrings

probabilityDates

extProb

manageHighProbability

manageLowProbability

persist

insertBuffer

prepareFinalTable

extractColumnNames

initDB

shutdown

getNumLeftObjects

getNumRightObjects

takeFullRanges

takeRange

computeRange

compute

postProcess