org.gcube.portlets.user.speciesdiscovery.server

Class TaxonomySearchServiceImpl

java.lang.Object

javax.servlet.GenericServlet

javax.servlet.http.HttpServlet

com.google.gwt.user.server.rpc.AbstractRemoteServiceServlet

com.google.gwt.user.server.rpc.RemoteServiceServlet

org.gcube.portlets.user.speciesdiscovery.server.TaxonomySearchServiceImpl

All Implemented Interfaces:

com.google.gwt.user.client.rpc.RemoteService, com.google.gwt.user.server.rpc.SerializationPolicyProvider, Serializable, javax.servlet.Servlet, javax.servlet.ServletConfig, TaxonomySearchService

public class TaxonomySearchServiceImpl
extends com.google.gwt.user.server.rpc.RemoteServiceServlet
implements TaxonomySearchService

The server side implementation of the RPC service.

Author:

"Francesco Mangiacrapa francesco.mangiacrapa@isti.cnr.it", "Federico De Faveri defaveri@isti.cnr.it" -

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
static String	BASETAXONOMY
protected static long	BUFFER_LIMIT
protected org.apache.log4j.Logger	logger
protected static long	MAX_BUFFERING_ELEMENTS
protected static String	RESUBMIT
protected static String	SAVE_CHILDREN_OF
static String	TAXONOMYUNKNOWN
static String	UNK

Fields inherited from class com.google.gwt.user.server.rpc.AbstractRemoteServiceServlet

perThreadRequest, perThreadResponse

Constructor Summary

Constructors

Constructor and Description
TaxonomySearchServiceImpl()

Method Summary

Modifier and Type	Method and Description
boolean	cancelGisLayerJob(String jobIdentifier) Cancel gis layer job.
boolean	cancelOccurrenceJob(String jobIdentifier) Cancel occurrence job.
boolean	cancelTaxonomyJob(String jobIdentifier) Cancel taxonomy job.
boolean	changeStatusGisLayerJob(String jobId, DownloadState state) Change status gis layer job.
boolean	changeStatusOccurrenceJob(String jobIdentifier, DownloadState state) Change status occurrence job.
boolean	changeStatusTaxonomyJob(String jobIdentifier, DownloadState state) Change status taxonomy job.
int	countOfSelectedRow()
JobGisLayerModel	createGisLayerJobFromSelectedOccurrenceKeys(String layerTitle, String layerDescr, long totalPoints)
List<JobOccurrencesModel>	createOccurrencesJob(List<JobOccurrencesModel> listJobOccurrenceModel, SaveFileFormat saveFileFormat, OccurrencesSaveEnum csvType, boolean isByDataSource, int expectedOccurrence)
JobTaxonomyModel	createTaxonomyJobByChildren(String taxonomyServiceId, String taxonomyName, String taxonomyRank, String dataSourceName) Creates the taxonomy job by children.
JobTaxonomyModel	createTaxonomyJobByIds(String search, List<DataSourceModel> dataSources) Creates the taxonomy job by ids.
protected File	generateCSVFile(List<String> ids, OccurrencesSaveEnum csvType) Generate csv file.
protected org.gcube.application.framework.core.session.ASLSession	getASLSession() Gets the ASL session.
OccurrencesStatus	getCountOfOccurrencesBatch() Gets the count of occurrences batch.
HashMap<String,Integer>	getFilterCounterById(GridField field)
HashMap<String,ClassificationModel>	getFilterCounterForClassification(String rankLabel) Gets the filter counter for classification.
protected Iterator<Occurrence>	getIteratorSelectedOccurrenceIds() Gets the iterator selected occurrence ids.
String	getLastQuery() Gets the last query.
List<JobGisLayerModel>	getListGisLayerJob() Gets the list gis layer job.
List<JobOccurrencesModel>	getListOccurrencesJob() Gets the list occurrences job.
List<JobTaxonomyModel>	getListTaxonomyJobs() Gets the list taxonomy jobs.
OccurrenceBatch	getOccurrencesBatch(int start, int limit) Gets the occurrences batch.
protected FetchingSession<Occurrence>	getOccurrenceSession() Gets the occurrence session.
List<Taxon>	getParentsList(Taxon taxon) Deprecated.
SearchResult<ResultRow>	getSearchResultRows(int start, int limit, ResultFilter activeFiltersObject, boolean onlySelected)
protected FetchingSession<? extends FetchingElement>	getSearchSession() Gets the search session.
SearchStatus	getSearchStatus(boolean onlySelected, boolean isActiveFilterOnResult)
SearchResult<TaxonomyRow>	getSearchTaxonomyRow(int start, int limit, ResultFilter activeFiltersObject, boolean onlySelected) Gets the search taxonomy row.
protected List<String>	getSelectedOccurrenceIds() Gets the selected occurrence ids.
protected List<String>	getSelectedOccurrenceKeys() Gets the selected occurrence keys.
protected List<String>	getSelectedResultRowId() Gets the selected result row id.
protected Map<String,String>	getSelectedTaxonomyIdAndDataSource() Gets the selected taxonomy id and data source.
protected SpeciesService	getSpeciesService() Gets the species service.
boolean	isAvailableOccurrenceJobReportError(String jobIdentifier) Checks if is available occurrence job report error.
boolean	isAvailableTaxonomyJobReportError(String jobIdentifier) Checks if is available taxonomy job report error.
ClusterCommonNameDataSourceForResultRow	loadClusterCommonNameForResultRowByScientificName(String scientificName) Load cluster common name for result row by scientific name.
ClusterCommonNameDataSourceForTaxonomyRow	loadClusterCommonNameForTaxonomyRowByScientificName(String scientificName) Load cluster common name for taxonomy row by scientific name.
List<DataSource>	loadDataSourceForResultRow(boolean selected, boolean distinct) Load data source for result row.
List<DataSourceModel>	loadDataSourceList() Load data source list.
ArrayList<LightTaxonomyRow>	loadListChildrenByParentId(String parentId) Load list children by parent id.
ArrayList<CommonName>	loadListCommonNameByRowId(String resultRowId) Deprecated.
ClusterStructuresForResultRow	loadStructuresForResultRowClustering() Load structures for result row clustering.
ClusterStructuresForTaxonomyRow	loadStructuresForTaxonomyClustering() Load structures for taxonomy clustering.
TaxonomyRow	loadTaxonomyParentByParentId(String parentID) Load taxonomy parent by parent id.
protected void	printId(List<String> listId) Prints the id.
JobGisLayerModel	resubmitGisLayerJob(String jobIdentifier) Resubmit gis layer job.
List<JobOccurrencesModel>	resubmitOccurrencesJob(String jobIdentifier) Resubmit occurrences job.
JobTaxonomyModel	resubmitTaxonomyJob(String jobIdentifier) Resubmit taxonomy job.
int	retrieveOccurencesFromSelection()
List<LightTaxonomyRow>	retrieveSynonymsByRefId(String refId) Retrieve synonyms by ref id.
List<LightTaxonomyRow>	retrieveTaxonomyByIds(List<String> ids) Retrieve taxonomy by ids.
boolean	saveGisLayerAsWsLink(JobGisLayerModel jobGisLayer, String destinationFolderId, String fileName) Save gis layer as ws link.
boolean	saveOccurrenceJob(JobOccurrencesModel jobModel, String destinationFolderId, String fileName, String scientificName, String dataSourceName) Save occurrence job.
boolean	saveOccurrenceJobError(JobOccurrencesModel jobModel, String destinationFolderId, String fileName, String scientificName, String dataSourceName) Save occurrence job error.
void	saveSelectedOccurrencePoints(String destinationFolderId, String fileName, SaveFileFormat fileFormat, OccurrencesSaveEnum typeCSV) Deprecated.
void	saveSelectedTaxonomyPoints(String destinationFolderId, String fileName, SaveFileFormat fileFormat) Save selected taxonomy points.
boolean	saveTaxonomyJob(String jobIdentifier, String destinationFolderId, String fileName, String scientificName, String dataSourceName) Save taxonomy job.
boolean	saveTaxonomyJobError(String jobIdentifier, String destinationFolderId, String fileName, String scientificName, String dataSourceName) Save taxonomy job error.
protected SearchResultType	search(String searchTerm, SearchType searchType, SearchFilters searchFilters) Search.
void	searchByCommonName(String searchTerm, SearchFilters searchFilters)
SearchByQueryParameter	searchByQuery(String query) Search by query.
void	searchByScientificName(String searchTerm, SearchFilters searchFilters)
void	stopRetrievingOccurrences()
void	stopSearchWithoutRemove()
void	updateRowSelection(int rowId, boolean selection)
Integer	updateRowSelections(boolean selection, ResultFilter activeFiltersObject)
void	userStopSearch() User stop search.

Methods inherited from class com.google.gwt.user.server.rpc.RemoteServiceServlet

checkPermutationStrongName, doGetSerializationPolicy, getCodeServerPolicyUrl, getRequestModuleBasePath, getSerializationPolicy, init, loadPolicyFromCodeServer, onAfterResponseSerialized, onBeforeRequestDeserialized, processCall, processCall, processPost, shouldCompressResponse

Methods inherited from class com.google.gwt.user.server.rpc.AbstractRemoteServiceServlet

doPost, doUnexpectedFailure, getPermutationStrongName, getThreadLocalRequest, getThreadLocalResponse, onAfterRequestDeserialized, readContent

Methods inherited from class javax.servlet.http.HttpServlet

doDelete, doGet, doHead, doOptions, doPut, doTrace, getLastModified, service, service

Methods inherited from class javax.servlet.GenericServlet

destroy, getInitParameter, getInitParameterNames, getServletConfig, getServletContext, getServletInfo, getServletName, init, log, log

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

SAVE_CHILDREN_OF

protected static final String SAVE_CHILDREN_OF

See Also:

Constant Field Values

RESUBMIT

protected static final String RESUBMIT

See Also:

Constant Field Values

MAX_BUFFERING_ELEMENTS

protected static final long MAX_BUFFERING_ELEMENTS

See Also:

Constant Field Values

BUFFER_LIMIT

protected static final long BUFFER_LIMIT

See Also:

Constant Field Values

logger

protected org.apache.log4j.Logger logger

TAXONOMYUNKNOWN

public static final String TAXONOMYUNKNOWN

See Also:

Constant Field Values

BASETAXONOMY

public static final String BASETAXONOMY

See Also:

Constant Field Values

UNK

public static final String UNK

See Also:

Constant Field Values

Constructor Detail

TaxonomySearchServiceImpl

public TaxonomySearchServiceImpl()

Method Detail

getASLSession

protected org.gcube.application.framework.core.session.ASLSession getASLSession()

Gets the ASL session.

Returns:

the ASL session

getSpeciesService

protected SpeciesService getSpeciesService()
                                    throws SearchServiceException

Gets the species service.

Returns:

the species service

Throws:

SearchServiceException - the search service exception

getSearchSession

protected FetchingSession<? extends FetchingElement> getSearchSession()
                                                               throws SearchServiceException

Gets the search session.

Returns:

the search session

Throws:

SearchServiceException - the search service exception

getOccurrenceSession

protected FetchingSession<Occurrence> getOccurrenceSession()
                                                    throws SearchServiceException

Gets the occurrence session.

Returns:

the occurrence session

Throws:

SearchServiceException - the search service exception

searchByScientificName

public void searchByScientificName(String searchTerm,
                                   SearchFilters searchFilters)
                            throws SearchServiceException

Specified by:

searchByScientificName in interface TaxonomySearchService

Throws:

SearchServiceException

searchByCommonName

public void searchByCommonName(String searchTerm,
                               SearchFilters searchFilters)
                        throws SearchServiceException

Specified by:

searchByCommonName in interface TaxonomySearchService

Throws:

SearchServiceException

search

protected SearchResultType search(String searchTerm,
                                  SearchType searchType,
                                  SearchFilters searchFilters)
                           throws SearchServiceException

Search.

Parameters:

searchTerm - the search term

searchType - the search type

searchFilters - the search filters

Returns:

the search result type

Throws:

SearchServiceException - the search service exception

searchByQuery

public SearchByQueryParameter searchByQuery(String query)
                                     throws SearchServiceException

Search by query.

Specified by:

searchByQuery in interface TaxonomySearchService

Parameters:

query - the query

Returns:

the search by query parameter

Throws:

SearchServiceException - the search service exception

getSearchResultRows

public SearchResult<ResultRow> getSearchResultRows(int start,
                                                   int limit,
                                                   ResultFilter activeFiltersObject,
                                                   boolean onlySelected)
                                            throws SessionExpired,
                                                   SearchServiceException

Specified by:

getSearchResultRows in interface TaxonomySearchService

Throws:

SessionExpired

SearchServiceException

getSearchTaxonomyRow

public SearchResult<TaxonomyRow> getSearchTaxonomyRow(int start,
                                                      int limit,
                                                      ResultFilter activeFiltersObject,
                                                      boolean onlySelected)
                                               throws SearchServiceException

Gets the search taxonomy row.

Specified by:

getSearchTaxonomyRow in interface TaxonomySearchService

Parameters:

start - the start

limit - the limit

activeFiltersObject - the active filters object

onlySelected - the only selected

Returns:

the search taxonomy row

Throws:

SearchServiceException - the search service exception

loadTaxonomyParentByParentId

public TaxonomyRow loadTaxonomyParentByParentId(String parentID)
                                         throws Exception

Load taxonomy parent by parent id.

Parameters:

parentID - the parent id

Returns:

the taxonomy row

Throws:

Exception - the exception

getFilterCounterById

public HashMap<String,Integer> getFilterCounterById(GridField field)
                                             throws Exception

Specified by:

getFilterCounterById in interface TaxonomySearchService

Throws:

Exception

getFilterCounterForClassification

public HashMap<String,ClassificationModel> getFilterCounterForClassification(String rankLabel)
                                                                      throws Exception

Gets the filter counter for classification.

Specified by:

getFilterCounterForClassification in interface TaxonomySearchService

Parameters:

rankLabel - the rank label

Returns:

the filter counter for classification

Throws:

Exception - the exception

getSearchStatus

public SearchStatus getSearchStatus(boolean onlySelected,
                                    boolean isActiveFilterOnResult)
                             throws SearchServiceException

Specified by:

getSearchStatus in interface TaxonomySearchService

Throws:

SearchServiceException

stopSearchWithoutRemove

public void stopSearchWithoutRemove()
                             throws SearchServiceException

Throws:

SearchServiceException

userStopSearch

public void userStopSearch()
                    throws SearchServiceException

User stop search.

Specified by:

userStopSearch in interface TaxonomySearchService

Throws:

SearchServiceException - the search service exception

updateRowSelection

public void updateRowSelection(int rowId,
                               boolean selection)
                        throws SearchServiceException

Specified by:

updateRowSelection in interface TaxonomySearchService

Throws:

SearchServiceException

updateRowSelections

public Integer updateRowSelections(boolean selection,
                                   ResultFilter activeFiltersObject)
                            throws SearchServiceException

Specified by:

updateRowSelections in interface TaxonomySearchService

Throws:

SearchServiceException

countOfSelectedRow

public int countOfSelectedRow()
                       throws SearchServiceException

Specified by:

countOfSelectedRow in interface TaxonomySearchService

Throws:

SearchServiceException

retrieveOccurencesFromSelection

public int retrieveOccurencesFromSelection()
                                    throws SearchServiceException

Specified by:

retrieveOccurencesFromSelection in interface TaxonomySearchService

Throws:

SearchServiceException

getOccurrencesBatch

public OccurrenceBatch getOccurrencesBatch(int start,
                                           int limit)
                                    throws SearchServiceException

Gets the occurrences batch.

Specified by:

getOccurrencesBatch in interface TaxonomySearchService

Parameters:

start - the start

limit - the limit

Returns:

the occurrences batch

Throws:

SearchServiceException - the search service exception

getCountOfOccurrencesBatch

public OccurrencesStatus getCountOfOccurrencesBatch()
                                             throws SearchServiceException

Gets the count of occurrences batch.

Specified by:

getCountOfOccurrencesBatch in interface TaxonomySearchService

Returns:

the count of occurrences batch

Throws:

SearchServiceException - the search service exception

stopRetrievingOccurrences

public void stopRetrievingOccurrences()
                               throws SearchServiceException

Specified by:

stopRetrievingOccurrences in interface TaxonomySearchService

Throws:

SearchServiceException

createGisLayerJobFromSelectedOccurrenceKeys

public JobGisLayerModel createGisLayerJobFromSelectedOccurrenceKeys(String layerTitle,
                                                                    String layerDescr,
                                                                    long totalPoints)
                                                             throws Exception

Specified by:

createGisLayerJobFromSelectedOccurrenceKeys in interface TaxonomySearchService

Throws:

Exception

printId

protected void printId(List<String> listId)

Prints the id.

Parameters:

listId - the list id

getSelectedOccurrenceIds

protected List<String> getSelectedOccurrenceIds()
                                         throws SearchServiceException

Gets the selected occurrence ids.

Returns:

the selected occurrence ids

Throws:

SearchServiceException - the search service exception

getIteratorSelectedOccurrenceIds

protected Iterator<Occurrence> getIteratorSelectedOccurrenceIds()
                                                         throws SearchServiceException

Gets the iterator selected occurrence ids.

Returns:

the iterator selected occurrence ids

Throws:

SearchServiceException - the search service exception

saveSelectedOccurrencePoints

@Deprecated
public void saveSelectedOccurrencePoints(String destinationFolderId,
                                                     String fileName,
                                                     SaveFileFormat fileFormat,
                                                     OccurrencesSaveEnum typeCSV)
                                              throws SearchServiceException

Deprecated.

Save selected occurrence points.

Specified by:

saveSelectedOccurrencePoints in interface TaxonomySearchService

Parameters:

destinationFolderId - the destination folder id

fileName - the file name

fileFormat - the file format

typeCSV - the type CSV

Throws:

SearchServiceException - the search service exception

saveSelectedTaxonomyPoints

public void saveSelectedTaxonomyPoints(String destinationFolderId,
                                       String fileName,
                                       SaveFileFormat fileFormat)
                                throws SearchServiceException

Save selected taxonomy points.

Specified by:

saveSelectedTaxonomyPoints in interface TaxonomySearchService

Parameters:

destinationFolderId - the destination folder id

fileName - the file name

fileFormat - the file format

Throws:

SearchServiceException - the search service exception

getSelectedOccurrenceKeys

protected List<String> getSelectedOccurrenceKeys()
                                          throws SearchServiceException

Gets the selected occurrence keys.

Returns:

the selected occurrence keys

Throws:

SearchServiceException - the search service exception

getSelectedResultRowId

protected List<String> getSelectedResultRowId()
                                       throws SearchServiceException

Gets the selected result row id.

Returns:

the selected result row id

Throws:

SearchServiceException - the search service exception

getSelectedTaxonomyIdAndDataSource

protected Map<String,String> getSelectedTaxonomyIdAndDataSource()
                                                         throws SearchServiceException

Gets the selected taxonomy id and data source.

Returns:

the selected taxonomy id and data source

Throws:

SearchServiceException - the search service exception

generateCSVFile

protected File generateCSVFile(List<String> ids,
                               OccurrencesSaveEnum csvType)
                        throws Exception

Generate csv file.

Parameters:

ids - the ids

csvType - the csv type

Returns:

the file

Throws:

Exception - the exception

loadDataSourceList

public List<DataSourceModel> loadDataSourceList()
                                         throws SearchServiceException

Load data source list.

Specified by:

loadDataSourceList in interface TaxonomySearchService

Returns:

the list

Throws:

SearchServiceException - the search service exception

loadListCommonNameByRowId

@Deprecated
public ArrayList<CommonName> loadListCommonNameByRowId(String resultRowId)
                                                            throws Exception

Deprecated.

Load list common name by row id.

Specified by:

loadListCommonNameByRowId in interface TaxonomySearchService

Parameters:

resultRowId - the result row id

Returns:

the array list

Throws:

Exception - the exception

getParentsList

@Deprecated
public List<Taxon> getParentsList(Taxon taxon)
                                       throws Exception

Deprecated.

Gets the parents list.

Specified by:

getParentsList in interface TaxonomySearchService

Parameters:

taxon - the taxon

Returns:

the parents list

Throws:

Exception - the exception

loadListChildrenByParentId

public ArrayList<LightTaxonomyRow> loadListChildrenByParentId(String parentId)
                                                       throws Exception

Load list children by parent id.

Specified by:

loadListChildrenByParentId in interface TaxonomySearchService

Parameters:

parentId - the parent id

Returns:

the array list

Throws:

Exception - the exception

getListTaxonomyJobs

public List<JobTaxonomyModel> getListTaxonomyJobs()
                                           throws SessionExpired,
                                                  Exception

Gets the list taxonomy jobs.

Specified by:

getListTaxonomyJobs in interface TaxonomySearchService

Returns:

the list taxonomy jobs

Throws:

SessionExpired - the session expired

Exception - the exception

createTaxonomyJobByChildren

public JobTaxonomyModel createTaxonomyJobByChildren(String taxonomyServiceId,
                                                    String taxonomyName,
                                                    String taxonomyRank,
                                                    String dataSourceName)
                                             throws Exception

Creates the taxonomy job by children.

Specified by:

createTaxonomyJobByChildren in interface TaxonomySearchService

Parameters:

taxonomyServiceId - the taxonomy service id

taxonomyName - the taxonomy name

taxonomyRank - the taxonomy rank

dataSourceName - the data source name

Returns:

the job taxonomy model

Throws:

Exception - the exception

createTaxonomyJobByIds

public JobTaxonomyModel createTaxonomyJobByIds(String search,
                                               List<DataSourceModel> dataSources)
                                        throws Exception

Creates the taxonomy job by ids.

Specified by:

createTaxonomyJobByIds in interface TaxonomySearchService

Parameters:

search - the search

dataSources - the data sources

Returns:

the job taxonomy model

Throws:

Exception - the exception

resubmitTaxonomyJob

public JobTaxonomyModel resubmitTaxonomyJob(String jobIdentifier)
                                     throws Exception

Resubmit taxonomy job.

Specified by:

resubmitTaxonomyJob in interface TaxonomySearchService

Parameters:

jobIdentifier - the job identifier

Returns:

the job taxonomy model

Throws:

Exception - the exception

cancelTaxonomyJob

public boolean cancelTaxonomyJob(String jobIdentifier)
                          throws Exception

Cancel taxonomy job.

Specified by:

cancelTaxonomyJob in interface TaxonomySearchService

Parameters:

jobIdentifier - the job identifier

Returns:

true, if successful

Throws:

Exception - the exception

saveTaxonomyJob

public boolean saveTaxonomyJob(String jobIdentifier,
                               String destinationFolderId,
                               String fileName,
                               String scientificName,
                               String dataSourceName)
                        throws Exception

Save taxonomy job.

Specified by:

saveTaxonomyJob in interface TaxonomySearchService

Parameters:

jobIdentifier - the job identifier

destinationFolderId - the destination folder id

fileName - the file name

scientificName - the scientific name

dataSourceName - the data source name

Returns:

true, if successful

Throws:

Exception - the exception

saveTaxonomyJobError

public boolean saveTaxonomyJobError(String jobIdentifier,
                                    String destinationFolderId,
                                    String fileName,
                                    String scientificName,
                                    String dataSourceName)
                             throws Exception

Save taxonomy job error.

Specified by:

saveTaxonomyJobError in interface TaxonomySearchService

Parameters:

jobIdentifier - the job identifier

destinationFolderId - the destination folder id

fileName - the file name

scientificName - the scientific name

dataSourceName - the data source name

Returns:

true, if successful

Throws:

Exception - the exception

retrieveTaxonomyByIds

public List<LightTaxonomyRow> retrieveTaxonomyByIds(List<String> ids)
                                             throws Exception

Retrieve taxonomy by ids.

Specified by:

retrieveTaxonomyByIds in interface TaxonomySearchService

Parameters:

ids - the ids

Returns:

the list

Throws:

Exception - the exception

retrieveSynonymsByRefId

public List<LightTaxonomyRow> retrieveSynonymsByRefId(String refId)
                                               throws Exception

Retrieve synonyms by ref id.

Specified by:

retrieveSynonymsByRefId in interface TaxonomySearchService

Parameters:

refId - the ref id

Returns:

the list

Throws:

Exception - the exception

createOccurrencesJob

public List<JobOccurrencesModel> createOccurrencesJob(List<JobOccurrencesModel> listJobOccurrenceModel,
                                                      SaveFileFormat saveFileFormat,
                                                      OccurrencesSaveEnum csvType,
                                                      boolean isByDataSource,
                                                      int expectedOccurrence)
                                               throws Exception

Specified by:

createOccurrencesJob in interface TaxonomySearchService

Throws:

Exception

resubmitOccurrencesJob

public List<JobOccurrencesModel> resubmitOccurrencesJob(String jobIdentifier)
                                                 throws Exception

Resubmit occurrences job.

Specified by:

resubmitOccurrencesJob in interface TaxonomySearchService

Parameters:

jobIdentifier - the job identifier

Returns:

the list

Throws:

Exception - the exception

getListOccurrencesJob

public List<JobOccurrencesModel> getListOccurrencesJob()
                                                throws SessionExpired,
                                                       Exception

Gets the list occurrences job.

Specified by:

getListOccurrencesJob in interface TaxonomySearchService

Returns:

the list occurrences job

Throws:

SessionExpired - the session expired

Exception - the exception

getListGisLayerJob

public List<JobGisLayerModel> getListGisLayerJob()
                                          throws SessionExpired,
                                                 Exception

Gets the list gis layer job.

Specified by:

getListGisLayerJob in interface TaxonomySearchService

Returns:

the list gis layer job

Throws:

SessionExpired - the session expired

Exception - the exception

saveOccurrenceJob

public boolean saveOccurrenceJob(JobOccurrencesModel jobModel,
                                 String destinationFolderId,
                                 String fileName,
                                 String scientificName,
                                 String dataSourceName)
                          throws Exception

Save occurrence job.

Specified by:

saveOccurrenceJob in interface TaxonomySearchService

Parameters:

jobModel - the job model

destinationFolderId - the destination folder id

fileName - the file name

scientificName - the scientific name

dataSourceName - the data source name

Returns:

true, if successful

Throws:

Exception - the exception

saveOccurrenceJobError

public boolean saveOccurrenceJobError(JobOccurrencesModel jobModel,
                                      String destinationFolderId,
                                      String fileName,
                                      String scientificName,
                                      String dataSourceName)
                               throws Exception

Save occurrence job error.

Specified by:

saveOccurrenceJobError in interface TaxonomySearchService

Parameters:

jobModel - the job model

destinationFolderId - the destination folder id

fileName - the file name

scientificName - the scientific name

dataSourceName - the data source name

Returns:

true, if successful

Throws:

Exception - the exception

cancelOccurrenceJob

public boolean cancelOccurrenceJob(String jobIdentifier)
                            throws Exception

Cancel occurrence job.

Specified by:

cancelOccurrenceJob in interface TaxonomySearchService

Parameters:

jobIdentifier - the job identifier

Returns:

true, if successful

Throws:

Exception - the exception

loadStructuresForResultRowClustering

public ClusterStructuresForResultRow loadStructuresForResultRowClustering()
                                                                   throws Exception

Load structures for result row clustering.

Specified by:

loadStructuresForResultRowClustering in interface TaxonomySearchService

Returns:

the cluster structures for result row

Throws:

Exception - the exception

loadClusterCommonNameForResultRowByScientificName

public ClusterCommonNameDataSourceForResultRow loadClusterCommonNameForResultRowByScientificName(String scientificName)
                                                                                          throws Exception

Load cluster common name for result row by scientific name.

Specified by:

loadClusterCommonNameForResultRowByScientificName in interface TaxonomySearchService

Parameters:

scientificName - the scientific name

Returns:

the cluster common name data source for result row

Throws:

Exception - the exception

loadDataSourceForResultRow

public List<DataSource> loadDataSourceForResultRow(boolean selected,
                                                   boolean distinct)
                                            throws Exception

Load data source for result row.

Specified by:

loadDataSourceForResultRow in interface TaxonomySearchService

Parameters:

selected - the selected

distinct - the distinct

Returns:

the list

Throws:

Exception - the exception

loadStructuresForTaxonomyClustering

public ClusterStructuresForTaxonomyRow loadStructuresForTaxonomyClustering()
                                                                    throws Exception

Load structures for taxonomy clustering.

Specified by:

loadStructuresForTaxonomyClustering in interface TaxonomySearchService

Returns:

the cluster structures for taxonomy row

Throws:

Exception - the exception

changeStatusOccurrenceJob

public boolean changeStatusOccurrenceJob(String jobIdentifier,
                                         DownloadState state)
                                  throws Exception

Change status occurrence job.

Specified by:

changeStatusOccurrenceJob in interface TaxonomySearchService

Parameters:

jobIdentifier - the job identifier

state - the state

Returns:

true, if successful

Throws:

Exception - the exception

changeStatusTaxonomyJob

public boolean changeStatusTaxonomyJob(String jobIdentifier,
                                       DownloadState state)
                                throws Exception

Change status taxonomy job.

Specified by:

changeStatusTaxonomyJob in interface TaxonomySearchService

Parameters:

jobIdentifier - the job identifier

state - the state

Returns:

true, if successful

Throws:

Exception - the exception

isAvailableTaxonomyJobReportError

public boolean isAvailableTaxonomyJobReportError(String jobIdentifier)
                                          throws Exception

Checks if is available taxonomy job report error.

Specified by:

isAvailableTaxonomyJobReportError in interface TaxonomySearchService

Parameters:

jobIdentifier - the job identifier

Returns:

true, if is available taxonomy job report error

Throws:

Exception - the exception

isAvailableOccurrenceJobReportError

public boolean isAvailableOccurrenceJobReportError(String jobIdentifier)
                                            throws Exception

Checks if is available occurrence job report error.

Specified by:

isAvailableOccurrenceJobReportError in interface TaxonomySearchService

Parameters:

jobIdentifier - the job identifier

Returns:

true, if is available occurrence job report error

Throws:

Exception - the exception

getLastQuery

public String getLastQuery()

Gets the last query.

Specified by:

getLastQuery in interface TaxonomySearchService

Returns:

the last query

loadClusterCommonNameForTaxonomyRowByScientificName

public ClusterCommonNameDataSourceForTaxonomyRow loadClusterCommonNameForTaxonomyRowByScientificName(String scientificName)

Load cluster common name for taxonomy row by scientific name.

Specified by:

loadClusterCommonNameForTaxonomyRowByScientificName in interface TaxonomySearchService

Parameters:

scientificName - the scientific name

Returns:

the cluster common name data source for taxonomy row

saveGisLayerAsWsLink

public boolean saveGisLayerAsWsLink(JobGisLayerModel jobGisLayer,
                                    String destinationFolderId,
                                    String fileName)
                             throws Exception

Save gis layer as ws link.

Specified by:

saveGisLayerAsWsLink in interface TaxonomySearchService

Parameters:

jobGisLayer - the job gis layer

destinationFolderId - the destination folder id

fileName - the file name

Returns:

true, if successful

Throws:

Exception - the exception

changeStatusGisLayerJob

public boolean changeStatusGisLayerJob(String jobId,
                                       DownloadState state)

Change status gis layer job.

Specified by:

changeStatusGisLayerJob in interface TaxonomySearchService

Parameters:

jobId - the job id

state - the state

Returns:

true, if successful

cancelGisLayerJob

public boolean cancelGisLayerJob(String jobIdentifier)
                          throws Exception

Cancel gis layer job.

Specified by:

cancelGisLayerJob in interface TaxonomySearchService

Parameters:

jobIdentifier - the job identifier

Returns:

true, if successful

Throws:

Exception - the exception

resubmitGisLayerJob

public JobGisLayerModel resubmitGisLayerJob(String jobIdentifier)
                                     throws Exception

Resubmit gis layer job.

Specified by:

resubmitGisLayerJob in interface TaxonomySearchService

Parameters:

jobIdentifier - the job identifier

Returns:

the job gis layer model

Throws:

Exception - the exception