Hierarchy For All Packages

Package Hierarchies:

• org.gcube.dataanalysis.ecoengine.interfaces,
• org.gcube.dataanalysis.executor.generators,
• org.gcube.dataanalysis.executor.job.management,
• org.gcube.dataanalysis.executor.messagequeue,
• org.gcube.dataanalysis.executor.nodes.algorithms,
• org.gcube.dataanalysis.executor.nodes.transducers,
• org.gcube.dataanalysis.executor.nodes.transducers.bionym,
• org.gcube.dataanalysis.executor.nodes.transducers.bionym.abstracts,
• org.gcube.dataanalysis.executor.nodes.transducers.bionym.implementations.matchers,
• org.gcube.dataanalysis.executor.nodes.transducers.bionym.implementations.parsers,
• org.gcube.dataanalysis.executor.nodes.transducers.bionym.implementations.workflows,
• org.gcube.dataanalysis.executor.nodes.transducers.bionym.interfaces,
• org.gcube.dataanalysis.executor.nodes.transducers.bionym.test,
• org.gcube.dataanalysis.executor.nodes.transducers.bionym.utils,
• org.gcube.dataanalysis.executor.rscripts,
• org.gcube.dataanalysis.executor.rscripts.generic,
• org.gcube.dataanalysis.executor.scripts,
• org.gcube.dataanalysis.executor.util

Class Hierarchy

• java.lang.Object
  • org.gcube.dataanalysis.ecoengine.interfaces.ActorNode (implements org.gcube.dataanalysis.ecoengine.interfaces.GenericAlgorithm)
    • org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode
      • org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsNativeNode
        • org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsNative2050Node
      • org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitable2050Node
    • org.gcube.dataanalysis.executor.nodes.transducers.bionym.BionymFlexibleWorkflowTransducer
      • org.gcube.dataanalysis.executor.nodes.transducers.bionym.BionymBiodiv
    • org.gcube.dataanalysis.executor.nodes.transducers.bionym.BionymWorkflow
    • org.gcube.dataanalysis.executor.nodes.algorithms.CMSY
    • org.gcube.dataanalysis.executor.nodes.algorithms.FAOMSY
    • org.gcube.dataanalysis.executor.nodes.algorithms.ICCATVPA
    • org.gcube.dataanalysis.executor.nodes.algorithms.LWR
    • org.gcube.dataanalysis.executor.nodes.transducers.OccurrenceMergingNode
      • org.gcube.dataanalysis.executor.nodes.transducers.OccurrenceIntersectionNode
      • org.gcube.dataanalysis.executor.nodes.transducers.OccurrenceSubtractionNode
  • org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableFunctions
  • org.gcube.dataanalysis.executor.nodes.transducers.bionym.BionymLocalTransducer (implements org.gcube.dataanalysis.ecoengine.interfaces.Transducerer)
  • org.gcube.dataanalysis.executor.nodes.transducers.bionym.CometMatcherManager
  • org.gcube.dataanalysis.executor.messagequeue.Consumer
  • org.gcube.dataanalysis.executor.generators.D4ScienceDistributedProcessing (implements org.gcube.dataanalysis.ecoengine.interfaces.Generator)
  • org.gcube.dataanalysis.executor.util.DataTransferer
  • org.gcube.dataanalysis.executor.job.management.DistributedProcessingAgentWPS
  • org.gcube.dataanalysis.executor.nodes.transducers.bionym.EVBPreprocessing
  • org.gcube.dataanalysis.executor.rscripts.generic.FilenameUtils
  • org.gcube.dataanalysis.executor.rscripts.generic.FileUtils
  • org.gcube.dataanalysis.executor.job.management.GenericWorkerCaller
  • org.gcube.dataanalysis.executor.nodes.transducers.bionym.abstracts.GenericWorkflow
    • org.gcube.dataanalysis.executor.nodes.transducers.bionym.implementations.workflows.BiOnymWF
  • org.gcube.dataanalysis.executor.util.InfraRetrieval
  • org.gcube.dataanalysis.executor.rscripts.generic.IOUtils
  • org.gcube.dataanalysis.executor.util.LocalRScriptsManager
  • org.gcube.dataanalysis.executor.nodes.transducers.bionym.abstracts.MatcherInput
  • org.gcube.dataanalysis.executor.nodes.transducers.bionym.abstracts.MatcherOutput
  • org.gcube.dataanalysis.executor.scripts.OSCommand
  • org.gcube.dataanalysis.executor.messagequeue.Producer
  • org.gcube.dataanalysis.executor.messagequeue.QCONSTANTS
  • org.gcube.dataanalysis.executor.messagequeue.QueueManager
  • org.gcube.dataanalysis.executor.nodes.transducers.bionym.abstracts.RealTimeMatcher
  • org.gcube.dataanalysis.executor.util.RScriptsManager
  • org.gcube.dataanalysis.executor.scripts.ScriptIOWorker
  • org.gcube.dataanalysis.executor.nodes.transducers.bionym.abstracts.SingleEntry
  • org.gcube.dataanalysis.ecoengine.interfaces.SpatialProbabilityDistributionNode (implements org.gcube.dataanalysis.ecoengine.interfaces.GenericAlgorithm)
    • org.gcube.dataanalysis.executor.nodes.algorithms.AquamapsSuitableNode1v
  • org.gcube.dataanalysis.ecoengine.interfaces.StandardLocalExternalAlgorithm (implements org.gcube.dataanalysis.ecoengine.interfaces.Transducerer)
    • org.gcube.dataanalysis.ecoengine.interfaces.StandardLocalInfraAlgorithm
      • org.gcube.dataanalysis.executor.rscripts.generic.GenericRScript
        • org.gcube.dataanalysis.executor.rscripts.KnitrCompiler
        • org.gcube.dataanalysis.executor.rscripts.TemplateRScripts
      • org.gcube.dataanalysis.executor.job.management.GenericWorker
      • org.gcube.dataanalysis.executor.rscripts.SGVMS_Interpolation
      • org.gcube.dataanalysis.executor.nodes.transducers.WebApplicationPublisher
  • org.gcube.dataanalysis.executor.util.StorageUtils
  • org.gcube.dataanalysis.executor.nodes.transducers.bionym.test.TestBiOnymBiodiv
  • org.gcube.dataanalysis.executor.nodes.transducers.bionym.test.TestBiOnymGenericWF
  • org.gcube.dataanalysis.executor.job.management.WPSJobManager
  • org.gcube.dataanalysis.executor.job.management.WPSJobManager.TasksWatcher (implements java.lang.Runnable)
  • org.gcube.dataanalysis.executor.nodes.transducers.bionym.utils.YasmeenFileTools
  • org.gcube.dataanalysis.executor.nodes.transducers.bionym.utils.YasmeenGlobalParameters
  • org.gcube.dataanalysis.executor.nodes.transducers.bionym.abstracts.YasmeenMatcher (implements org.gcube.dataanalysis.executor.nodes.transducers.bionym.interfaces.Matcher)
    • org.gcube.dataanalysis.executor.nodes.transducers.bionym.implementations.matchers.FuzzyMatcher
    • org.gcube.dataanalysis.executor.nodes.transducers.bionym.implementations.matchers.GsayMatcher
    • org.gcube.dataanalysis.executor.nodes.transducers.bionym.implementations.matchers.LevensteinMatcher
    • org.gcube.dataanalysis.executor.nodes.transducers.bionym.implementations.matchers.MixedLexicalMatcher
    • org.gcube.dataanalysis.executor.nodes.transducers.bionym.implementations.matchers.SoundexMatcher
    • org.gcube.dataanalysis.executor.nodes.transducers.bionym.implementations.matchers.TrigramMatcher
  • org.gcube.dataanalysis.executor.nodes.transducers.bionym.implementations.parsers.YasmeenParser (implements org.gcube.dataanalysis.executor.nodes.transducers.bionym.interfaces.Parser)

Interface Hierarchy

• org.gcube.dataanalysis.executor.nodes.transducers.bionym.interfaces.Matcher
• org.gcube.dataanalysis.executor.nodes.transducers.bionym.interfaces.Parser
• org.gcube.dataanalysis.executor.nodes.transducers.bionym.interfaces.PostProcessor

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • org.gcube.dataanalysis.executor.messagequeue.ATTRIBUTE
    • org.gcube.dataanalysis.executor.rscripts.SGVMS_Interpolation.methodEnum
    • org.gcube.dataanalysis.executor.nodes.transducers.bionym.CometMatcherManager.Parsers
    • org.gcube.dataanalysis.executor.nodes.transducers.bionym.CometMatcherManager.Reference
    • org.gcube.dataanalysis.executor.nodes.transducers.bionym.CometMatcherManager.Weights
    • org.gcube.dataanalysis.executor.nodes.transducers.bionym.EVBPreprocessing.Preprocessors
    • org.gcube.dataanalysis.executor.nodes.transducers.bionym.utils.YasmeenGlobalParameters.BuiltinDataSources
    • org.gcube.dataanalysis.executor.nodes.transducers.bionym.utils.YasmeenGlobalParameters.BuiltinParsers
    • org.gcube.dataanalysis.executor.nodes.transducers.bionym.utils.YasmeenGlobalParameters.BuiltinMatchers
    • org.gcube.dataanalysis.executor.nodes.transducers.bionym.utils.YasmeenGlobalParameters.Performance